From d4b65c0431accd059c70b502854d2f87a85d63e0 Mon Sep 17 00:00:00 2001
From: Danny Park <dpark@broadinstitute.org>
Date: Fri, 19 Jun 2020 16:02:26 -0400
Subject: [PATCH] switch to a docker that can run bash

---
 pipes/WDL/tasks/tasks_reports.wdl | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pipes/WDL/tasks/tasks_reports.wdl b/pipes/WDL/tasks/tasks_reports.wdl
index b2e6f5d4d..c16319367 100644
--- a/pipes/WDL/tasks/tasks_reports.wdl
+++ b/pipes/WDL/tasks/tasks_reports.wdl
@@ -367,7 +367,7 @@ task tsv_join {
     String         join_type="inner"
     String         out_basename
 
-    String         docker="jdkelley/csvkit"
+    String         docker="stratdat/csvkit"
   }
 
   command {
@@ -408,7 +408,7 @@ task tsv_stack {
   input {
     Array[File]+   input_tsvs
     String         out_basename
-    String         docker="jdkelley/csvkit"
+    String         docker="stratdat/csvkit"
   }
 
   command {
@@ -464,6 +464,7 @@ task compare_two_genomes {
     docker: "${docker}"
     disks: "local-disk 50 HDD"
     dx_instance_type: "mem1_ssd1_v2_x2"
+    preemptible: 1
   }
 }