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scaffold multitaxa: drop empty assembly output rows
viral-pipelines CI #2571: Pull request #554 opened by dpark01
September 18, 2024 14:21 26m 25s dp-scaffold
September 18, 2024 14:21 26m 25s
the genbank workflow now hits live NCBI databases -- remove it from C…
viral-pipelines CI #2570: Commit 3a50994 pushed by dpark01
September 18, 2024 13:56 25m 47s dp-scaffold
September 18, 2024 13:56 25m 47s
drop zero length assemblies
viral-pipelines CI #2569: Commit 9017298 pushed by dpark01
September 18, 2024 13:22 28m 13s dp-scaffold
September 18, 2024 13:22 28m 13s
missing python import
viral-pipelines CI #2568: Commit f6942c3 pushed by dpark01
September 18, 2024 13:15 28m 9s dp-demux
September 18, 2024 13:15 28m 9s
bugfix for when many previous libraries exist
viral-pipelines CI #2567: Commit e39c7d1 pushed by dpark01
September 17, 2024 20:13 33m 10s dp-demux
September 17, 2024 20:13 33m 10s
Scheduled
CodeQL #83: by github-advanced-security bot
September 13, 2024 12:02 1m 46s
September 13, 2024 12:02 1m 46s
Scheduled
CodeQL #82: by github-advanced-security bot
September 6, 2024 12:02 1m 46s
September 6, 2024 12:02 1m 46s
oops
viral-pipelines CI #2566: Commit 4eb51c2 pushed by dpark01
September 5, 2024 21:19 26m 46s dp-genbank
September 5, 2024 21:19 26m 46s
add new outputs to assembly table: assembly_method_version, biosample…
viral-pipelines CI #2565: Commit 2137472 pushed by dpark01
September 5, 2024 21:12 2m 52s dp-genbank
September 5, 2024 21:12 2m 52s
oops: add actual workflow
viral-pipelines CI #2564: Commit f6d2105 pushed by dpark01
September 5, 2024 14:04 28m 9s dp-genbank
September 5, 2024 14:04 28m 9s
initial layout of genbank_single workflow
viral-pipelines CI #2563: Commit cd041ac pushed by dpark01
September 5, 2024 14:03 28m 7s dp-genbank
September 5, 2024 14:03 28m 7s
drop members from sample table if empty cleaned bam
viral-pipelines CI #2562: Commit 6f8b0ae pushed by dpark01
September 5, 2024 13:03 27m 24s dp-demux
September 5, 2024 13:03 27m 24s
Merge pull request #552 from broadinstitute/dp-demux
viral-pipelines CI #2561: Commit 7bbfee4 pushed by dpark01
September 5, 2024 12:55 30m 13s dp-genbank
September 5, 2024 12:55 30m 13s
Scheduled
CodeQL #81: by github-advanced-security bot
August 30, 2024 12:02 2m 21s
August 30, 2024 12:02 2m 21s
PR #553
CodeQL #80: by tomkinsc
August 23, 2024 23:29 1m 44s
August 23, 2024 23:29 1m 44s
attempt at fixing OpenBLAS-related nproc limit
viral-pipelines CI #2560: Pull request #553 synchronize by tomkinsc
August 23, 2024 23:29 27m 56s ct-bugfix-depletion-nproc-limit
August 23, 2024 23:29 27m 56s
set export OPENBLAS_NUM_THREADS=1 in fastqc task
viral-pipelines CI #2559: Commit cf704e8 pushed by tomkinsc
August 23, 2024 23:29 27m 51s ct-bugfix-depletion-nproc-limit
August 23, 2024 23:29 27m 51s
PR #553
CodeQL #79: by tomkinsc
August 23, 2024 23:05 1m 41s
August 23, 2024 23:05 1m 41s
attempt at fixing OpenBLAS-related nproc limit
viral-pipelines CI #2558: Pull request #553 synchronize by tomkinsc
August 23, 2024 23:05 27m 52s ct-bugfix-depletion-nproc-limit
August 23, 2024 23:05 27m 52s
add export OPENBLAS_NUM_THREADS=1 to illumina_demux task
viral-pipelines CI #2557: Commit c709399 pushed by tomkinsc
August 23, 2024 23:05 28m 8s ct-bugfix-depletion-nproc-limit
August 23, 2024 23:05 28m 8s
PR #553
CodeQL #78: by tomkinsc
August 23, 2024 22:33 1m 52s
August 23, 2024 22:33 1m 52s
attempt at fixing OpenBLAS-related nproc limit
viral-pipelines CI #2556: Pull request #553 synchronize by tomkinsc
August 23, 2024 22:33 31m 55s ct-bugfix-depletion-nproc-limit
August 23, 2024 22:33 31m 55s
PR #553
CodeQL #77: by tomkinsc
August 23, 2024 21:32 1m 53s
August 23, 2024 21:32 1m 53s
attempt at fixing OpenBLAS-related nproc limit
viral-pipelines CI #2554: Pull request #553 opened by tomkinsc
August 23, 2024 21:32 27m 55s ct-bugfix-depletion-nproc-limit
August 23, 2024 21:32 27m 55s