v0.9.0

Added

• Studies can now be shared with FireCloud user groups. Users in the specified groups will be able to view portal studies, their associated FireCloud workspaces, and GCS buckets. (#125)
• Condensed bundle of Morpheus.js dependencies (morpheus-external-r.js) (#125)
• Content format validators for all string-based model attributes that are set via forms, as well as study & gene search forms (#125)

Changed

• Updated to jquery 3.3.1, latest version of Morpheus.js
  • Removed individual Morpheus.js external dependencies (#125)
• Setting cluster point size per trace via the marker.size attribute, rather than marker_size array to more faithfully honor point size on 3d clusters (#125)
  • Also fixes issue with OSX High Sierra not properly rendering multi-trace Plotly scatter plots
• Violin plots now use native Plotly 'violin' chart type (#125)
• Main study scatter plots now auto-size to available window viewport (#125)
• User annotation creation leaves 2d scatter plots in 'scattergl' mode rather than replotting in non-gl mode
• Updated gem sprockets re: CVE-2018-3760 (#127)

Fixed

• Prevent users from changing FireCloud attributes (project & workspace) for existing studies (#125)
• Fixed issue with data points dropdown selector for box plots from not rendering/working (#125)
• User annotation form delete button now removes correct label (#125)
• Updating user annotations no longer causes source annotation to lose associations with any subsamples (if points > 1000) (#125)

v0.8.1

Fixed

• Corrected branding group query parameter name when paginating studies on home page (#118)

v0.8.0

Added

• Ideogram.js (#115)
• Genome tab (under 'Explore' in Study Overview) for genome-based visualizations (#115)
• Support for running WDLs that are file- rather than sample-based. (#115)
• CongifurationOption class for adding key-value extra configuration options to AdminConfigurations (#115)

Changed

• Reorganized front end tabs, 'workflows' is now called 'analysis' (#115)
• Updated custom CellRanger sync to support new version of WDL (#115)

Fixed

• Portal no longer attempts to load billing accounts that a user is not the owner of, which prevents loading the billing_projects section and blocks some study creation (#115)
• Correctly sanitizing cluster & gene list names on creation to prevent invalid URL parameter parsing (#115)
• Correctly catches 409 conflict errors when creating workspaces and prevents deletion (#115)

v0.7.0

Added

• bin/boot_docker now accepts a value for DOCKER_IMAGE_VERSION as a command line argument (#112)

Changed

• Booting the portal in production no longer tries to link with a local Docker instance for the database, instead will connect to a remote host (#112)
• Booting in production mode also will no longer limit memory for the portal Docker container (#112)

Fixed

• Updating rails-html-sanitizer gem re: CVE-2018-3741 XSS vulnerability (#112)
• Updating loofah gem re: CVE-2018-8048 XSS vulnerability (#112)

v0.6.4

Fixed

• Correcting CellRanger transcriptomeTarGz input parameter namespacing in WorkflowConfiguration

v0.6.3

Fixed

• Weekly returning users query in ReportsController now returns the most recent 6 months, not first 6 months of reporting

v0.6.2

Fixed

• Properly handling querying for fastq file size in Reports Controller plot on input file size vs. runtime (#106, #107)

v0.6.1

Fixed

• Corrected url parameter name when enabling/preserving branding mode (#105)

v0.6.0

Added

• WorkflowConfiguration support for Smart-seq2 WDL pipeline (#102)

Changed

• Automatically adding project owner permissions for portal service account on FireCloud projects created outside of the portal when creating studies (#102)
• Docker image now supports version numbers, will default to 'latest' (#102)

Fixed

• Preventing users from changing FireCloud project references to existing studies (#102)

v0.5.0

Added

• Configurable branding groups to apply a custom look & feel to groups of studies, including scoping search and discovery (#99, #100)

Changed

• Clicking 'Sign In' now initiates authentication handshake immediately rather than requiring the user to click the 'Sign in with Google' button (#99)