From 52c01b5f39c80d82597ae2cb3163908daa4c1318 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=B6kalp=20=C3=87elik?= <37572619+gokalpcelik@users.noreply.github.com> Date: Sat, 11 May 2024 21:54:54 +0300 Subject: [PATCH] Update AbstractAlignmentMerger.java Warning Message --- src/main/java/picard/sam/AbstractAlignmentMerger.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/picard/sam/AbstractAlignmentMerger.java b/src/main/java/picard/sam/AbstractAlignmentMerger.java index 728c753e56..98fd7c151b 100644 --- a/src/main/java/picard/sam/AbstractAlignmentMerger.java +++ b/src/main/java/picard/sam/AbstractAlignmentMerger.java @@ -637,7 +637,7 @@ private void addIfNotFiltered(final Sink out, final SAMRecord rec) { if (includeSecondaryAlignments || !rec.getNotPrimaryAlignmentFlag()) { out.add(rec); if (this.progress.record(rec) && crossSpeciesReads > 0) { - log.info(String.format("%d Reads have been unmapped due to being suspected of being Cross-species contamination.", crossSpeciesReads)); + log.info(String.format("%d Reads have been unmapped due to suspicion of Cross-species contamination.", crossSpeciesReads)); } } }