diff --git a/src/main/java/picard/sam/markduplicates/MarkDuplicates.java b/src/main/java/picard/sam/markduplicates/MarkDuplicates.java index bcde79a5ff..b1ad890eae 100644 --- a/src/main/java/picard/sam/markduplicates/MarkDuplicates.java +++ b/src/main/java/picard/sam/markduplicates/MarkDuplicates.java @@ -555,7 +555,7 @@ private void buildSortedReadEndLists(final boolean useBarcodes) { if (rec.getReadPairedFlag() && !rec.getMateUnmappedFlag()) { final StringBuilder key = new StringBuilder(); - key.append(ReservedTagConstants.READ_GROUP_ID); + key.append(rec.getReadGroup().getReadGroupId()); key.append(rec.getReadName()); ReadEndsForMarkDuplicates pairedEnds = tmp.remove(rec.getReferenceIndex(), key.toString());