From 2f08fc353a50adf75f43f47ffc1b09b055e37212 Mon Sep 17 00:00:00 2001 From: jkgoodrich <33063077+jkgoodrich@users.noreply.github.com> Date: Fri, 10 Jan 2025 11:49:02 -0700 Subject: [PATCH] Add gecode version globals --- gnomad/resources/grch37/gnomad.py | 5 +++++ gnomad/resources/grch38/gnomad.py | 7 +++++++ 2 files changed, 12 insertions(+) diff --git a/gnomad/resources/grch37/gnomad.py b/gnomad/resources/grch37/gnomad.py index a46a08926..887b6bb18 100644 --- a/gnomad/resources/grch37/gnomad.py +++ b/gnomad/resources/grch37/gnomad.py @@ -20,6 +20,11 @@ CURRENT_EXOME_COVERAGE_RELEASE = "2.1" CURRENT_GENOME_COVERAGE_RELEASE = "2.1" +GENCODE_VERSION_BY_RELEASE = { + "2.1": "v19", + "2.1.1": "v19", +} + SUBPOPS = { "NFE": ["BGR", "EST", "NWE", "SEU", "SWE", "ONF"], "EAS": ["KOR", "JPN", "OEA"], diff --git a/gnomad/resources/grch38/gnomad.py b/gnomad/resources/grch38/gnomad.py index 3403a1d14..0056e5d51 100644 --- a/gnomad/resources/grch38/gnomad.py +++ b/gnomad/resources/grch38/gnomad.py @@ -42,6 +42,13 @@ EXOME_AN_RELEASES = ["4.1"] GENOME_AN_RELEASES = ["4.1"] +GENCODE_VERSION_BY_RELEASE = { + "3.0": "v29", + "3.1": "v35", + "4.0": "v39", + "4.1": "v39", +} + DATA_TYPES = ["exomes", "genomes", "joint"] MAJOR_RELEASES = ["v3", "v4"] CURRENT_MAJOR_RELEASE = MAJOR_RELEASES[-1]