From 767e8a216ca911f25c9804882c69b2983149b88d Mon Sep 17 00:00:00 2001 From: Mark Walker Date: Tue, 10 Sep 2024 10:04:14 -0400 Subject: [PATCH] Update ref panel vcfs --- inputs/values/ref_panel_1kg.json | 624 +++++++++++++++---------------- 1 file changed, 312 insertions(+), 312 deletions(-) diff --git a/inputs/values/ref_panel_1kg.json b/inputs/values/ref_panel_1kg.json index bec57125e..4ee29e419 100644 --- a/inputs/values/ref_panel_1kg.json +++ b/inputs/values/ref_panel_1kg.json @@ -2838,320 +2838,320 @@ "samples_list": "gs://gatk-sv-ref-panel-1kg/outputs/GATKSVPipelineBatch/38c65ca4-2a07-4805-86b6-214696075fef/samples_list.txt", "sample_pop_assignments": "gs://gatk-sv-resources-public/hg38/v0/sv-resources/ref-panel/1KG/v2/populations.ref_panel_1kg.tsv", "scramble_vcfs": [ - "gs://gatk-sv-ref-panel-1kg/outputs/mw-scramble/Scramble/HG00096.scramble.vcf.gz", - "gs://gatk-sv-ref-panel-1kg/outputs/mw-scramble/Scramble/HG00129.scramble.vcf.gz", - 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