This folder contains the code necessary to reproduce the analysis for the DeepVelo manuscript
Most notebooks can run directly and download necessary data automatically. For running python notebooks using the hindbrain data or running the R scripts:
- Please download the necessary files from https://doi.org/10.6084/m9.figshare.24716592:
wget -O deepvelo_data.tar.gz https://figshare.com/ndownloader/files/43428348
- Untar and extract the main directory
tar -xzvf deepvelo_data.tar.gz
For R scripts - please change directories into the r_analysis subfolder and follow the instructions
to download and install the conda environment for generating the R figures and analyses.