From 619f63be730250f2ad4b7a933636373a8f376c43 Mon Sep 17 00:00:00 2001 From: Jim Shaw Date: Wed, 11 Oct 2023 22:55:01 -0700 Subject: [PATCH] Update README.md --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 68f1ad2..d4f9272 100644 --- a/README.md +++ b/README.md @@ -121,6 +121,10 @@ For more information about using the specific skani subcommands, see the [guide 2. #### [Tutorial: classifying entire assemblies against > 85,000 genomes in under 2 minutes](https://github.com/bluenote-1577/skani/wiki/Tutorial:-classifying-entire-assemblies-(MAGs-or-contigs)-against-85,000-genomes-in-under-2-minutes) 3. #### [Tutorial: strain-level clustering of MAGs using skani, and why Mash/FastANI have issues](https://github.com/bluenote-1577/skani/wiki/Tutorial:-strain-and-species-level-clustering-of-MAGs-with-skani-triangle) +### [skani cookbook](https://github.com/bluenote-1577/skani/wiki/skani-cookbook) + +Some common use cases and parameter settings are outlined in the cookbook. + ### [skani advanced usage information](https://github.com/bluenote-1577/skani/wiki/skani-advanced-usage-guide) See the advanced usage guide linked above for more information about topics such as: