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lumbricus.bio.ed.ac.uk
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BLASTx v Uniprot
Top hit from a BLAST search with the consensus sequence against
the Uinprot database.
Quoted score is the BLAST e-value.
http://www.ncbi.nlm.nih.gov/BLAST/
http://www.ebi.uniprot.org/
BLASTx v wormpep
Top hit from a BLAST search with the consensus sequence against
the wormpep database
Quoted score is the BLAST e-value
http://www.sanger.ac.uk/Projects/C_elegans/
GO: Gene Ontology
Top hit from a BLAST search with the prdicted protein sequence
against the GO database.
Quoted score is the BLAST e-value
http://www.geneontology.org/GO.database.shtml
KEGG: Kyoto Encyclopedia of Genes and Genomes
Top hit from a BLAST search with the predicted protein sequence
against the KEGG pathway database.
Quoted score is the BLAST e-value.
http://www.genome.jp/kegg/
EC: Encyme Commision
Top hit from a BLAST search with the predicted protein sequence
against the EC database.
http://www.chem.qmul.ac.uk/iubmb/enzyme/
InterProScan
Search of multiple databases with the predicted protein
sequence using either HMMER or BLAST search method to find
protein domains and functional sites.
Quoted score is the search method e-value.
http://www.ebi.ac.uk/InterProScan/
Databases searched by InterProScan
PROSITE
PRINTS
Pfam
ProDom
SMART
TIGRFAMs
PIR superfamily
SUPERFAMILY
Gene3D
PANTHER