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domSearch.shtml
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<!-- InstanceBegin template="/Templates/bang.dwt" codeOutsideHTMLIsLocked="false" -->
<head>
<!-- InstanceBeginEditable name="doctitle" -->
<title> www.nematodes.org - NEMBASE4 </title>
<!-- InstanceEndEditable -->
<!--#include virtual="/includes/nembase4_header.ssi" -->
</head>
<body>
<!--#include virtual="/includes/nembase4_body_upper.ssi" -->
<!-- InstanceBeginEditable name="BodyEditRegion" -->
<script type="text/javascript" src="species_selection.js"></script>
<script type="text/javascript" src="hide_show.js"></script>
<div class="mainTitle">Search NEMBASE4 for a specific protein domain identifier</div><br>
<div class="mainMed">Enter a domain ID from one of the domain and pattern databases listed below, then
hit the 'Go' button to retrieve the details of instances of that domain in Nembase. You can limit the species searched using the Species selection tool below. <br>
<br>
</div>
<table class="tablephp1">
<div class="mainMed">
<tr>
<td>Database</td><td>e.g.</td>
<td>Database</td><td>e.g.</td>
</tr>
<tr>
<td class="tablephp21">Pfam</td><td class="tablephp21">PF01968</td>
<td class="tablephp21">HMMPanther</td><td class="tablephp21">PTHR11588</td>
</tr>
<tr>
<td class="tablephp21">superfamily</td><td class="tablephp21">SSF52490</td>
<td class="tablephp21">BlastProDom</td><td class="tablephp21">PD000944</td>
</tr>
<tr>
<td class="tablephp21">PIR</td><td class="tablephp21">PIRSF002116</td>
<td class="tablephp21">Smart</td><td class="tablephp21">SM00326</td>
</tr>
<tr>
<td class="tablephp21">Tigr</td><td class="tablephp21">TIGR00049</td>
<td class="tablephp21">ProfileScan</td><td class="tablephp21">PS50939</td>
</tr>
<tr>
<td class="tablephp21">ScanRegExp</td><td class="tablephp21">PS01031</td>
<td class="tablephp21">InterPro</td><td class="tablephp21">IPR000217</td>
</tr>
</div>
<tr>
<td colspan=4><form method="post" action="../nembase4/domain.php">
<table width="100%" class="tablephp21">
<tr>
<td>
By default all species are selected, to manually select by clade or species <a href="javascript:toggle('hide')">click here</a>
<div id="hide" style="display: none;">
<table>
<tr>
<td valign="top"><input TYPE="hidden" NAME="spec" value ="0">
<!--#include virtual="species_db_queries.php" -->
</td>
</tr>
</table>
</div>
</td>
</tr>
<tr>
<td colspan=3>
<table align="center">
<tr height=10></tr>
<tr>
<td><div class="mainTitle">Domain ID</div></td>
<td align=center><input type="text" name="domain"></td>
<td align=left><input type="submit" value="Go"></td>
</tr>
<tr height=10></tr>
</table>
</td>
</tr>
</table>
</form></td>
</tr>
</table>
<!-- InstanceEndEditable -->
<!--#include virtual="/includes/nembase4_body_lower.ssi" -->
</body>
<!-- InstanceEnd -->
</html>