Change Log

All notable changes to this project will be documented in this file. This project adheres to Semantic Versioning.

[0.9.1] 2024-08-05

Changed

Updated version of bundled versioneer package for Python 3.12 compatibility, improved environment hygiene (#36)
Updated test suite to accommodate bugfix affecting taxonkit filter behavior with discard_norank argument (#37)

[0.9] 2024-03-08

Added

Support for new -K/--keep-invalid flag in taxonkit lca command (#35); see https://github.com/shenwei356/taxonkit/releases/tag/v0.16.0

Changed

Updated test suite to accommodate taxonomy DB changes (#28, #29, #30)

[0.8] 2022-08-30

Changed

Updated doctest for pytaxonkit.list to include taxa that are updated in the NCBI taxonomy DB less frequently (#13, #14, #21, #24)
Other occasional updates to compensate for changes in the NCBI taxonomy DB (#15, #16, #17, #23, #26)
Updated pytaxonkit.list_ranks() to match updated taxonkit filter --list-order behavior (#20)
Now using Black instead of pycodestyle to check and autoformat Python code (#27)

Fixed

Bug with how certain functions handle empty inputs (#19)
Bug causing pytaxonkit.lineage to fail when only a single taxid was provided as input (#22)
Bug causing pytaxonkit.lca to fail when all input taxids are deleted or "unfound" (#22)
Bug causing pytaxonkit.name to fail on empty inputs (#26)

[0.7.2] 2021-01-27

Added

New filter() function supporting new taxonkit filter command (#4, #8)
New lca() function supporting new taxonkit lca command (#5)
Support for new prefix related flags (#6)
Use new --show-lineage-ranks to create new FullLineageRanks column in lineage() output (#8)

[0.6.1] 2020-10-30

Added

New name() function taking advantage of new --show-name and --no-lineage flags in taxonkit lineage (#2)

[0.6] 2020-06-12

Initial release!