From 2c0085d9349f9593f832fdd75be86e1430d5ec5e Mon Sep 17 00:00:00 2001
From: FriederikeHanssen <friederike.hanssen@seqera.io>
Date: Tue, 29 Oct 2024 14:23:09 +0000
Subject: [PATCH 1/6] patch build.sh

---
 recipes/spring/build.sh | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/recipes/spring/build.sh b/recipes/spring/build.sh
index 08e68971964f4..5ef7049c7586e 100644
--- a/recipes/spring/build.sh
+++ b/recipes/spring/build.sh
@@ -8,6 +8,12 @@ export CXXPATH=${PREFIX}/include
 export CFLAGS="$CFLAGS -I$PREFIX/include"
 export CXXFLAGS="$CFLAGS -I$PREFIX/include"
 export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
-cmake -Dspring_optimize_for_portability=ON ..
+if [ $(arch) == aarch64 ]; then
+   cmake ..
+  else
+      cmake -Dspring_optimize_for_portability=ON ..
+fi
 make
 cp spring $PREFIX/bin
+
+

From 8cf138bd72201525dd86c00681540558907dbe94 Mon Sep 17 00:00:00 2001
From: FriederikeHanssen <friederike.hanssen@seqera.io>
Date: Wed, 30 Oct 2024 10:42:22 +0000
Subject: [PATCH 2/6] bump build number

---
 recipes/spring/meta.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/recipes/spring/meta.yaml b/recipes/spring/meta.yaml
index 3025d74de5bd1..d45cfd61ca5c9 100644
--- a/recipes/spring/meta.yaml
+++ b/recipes/spring/meta.yaml
@@ -5,7 +5,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 3
   skip: True  # [osx]
 
 source:

From 61d60ae937c5ee84a2a426dbe24a9081268d2cb9 Mon Sep 17 00:00:00 2001
From: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
Date: Wed, 30 Oct 2024 11:44:07 +0100
Subject: [PATCH 3/6] Update recipes/spring/build.sh

Drop newlines
---
 recipes/spring/build.sh | 2 --
 1 file changed, 2 deletions(-)

diff --git a/recipes/spring/build.sh b/recipes/spring/build.sh
index 5ef7049c7586e..97e810f958ef4 100644
--- a/recipes/spring/build.sh
+++ b/recipes/spring/build.sh
@@ -15,5 +15,3 @@ if [ $(arch) == aarch64 ]; then
 fi
 make
 cp spring $PREFIX/bin
-
-

From 750c245bc725621e6d3801c5600ca6940daa0e19 Mon Sep 17 00:00:00 2001
From: FriederikeHanssen <friederike.hanssen@seqera.io>
Date: Wed, 30 Oct 2024 11:33:16 +0000
Subject: [PATCH 4/6] apply review comments

---
 recipes/spring/Makefile.patch | 23 +++++++++++++++++++++++
 recipes/spring/build.sh       |  2 +-
 2 files changed, 24 insertions(+), 1 deletion(-)
 create mode 100644 recipes/spring/Makefile.patch

diff --git a/recipes/spring/Makefile.patch b/recipes/spring/Makefile.patch
new file mode 100644
index 0000000000000..68c4e799d9dd8
--- /dev/null
+++ b/recipes/spring/Makefile.patch
@@ -0,0 +1,23 @@
+diff --git a/src/libbsc/bsc.h b/src/libbsc/bsc.h
+index 25230dc..caca189 100644
+--- a/src/libbsc/bsc.h
++++ b/src/libbsc/bsc.h
+@@ -48,6 +48,7 @@ preprocessor macro LIBBSC_SORT_TRANSFORM_SUPPORT at compile time.
+ #ifndef SPRING_LIBBSC_BSC_H_
+ #define SPRING_LIBBSC_BSC_H_
+ 
++#include <cstdint>
+ #include "params.h"
+ 
+ namespace spring {
+diff --git a/src/util.h b/src/util.h
+index 30bad68..a72a0b6 100644
+--- a/src/util.h
++++ b/src/util.h
+@@ -17,6 +17,7 @@ limitations under the License.
+ 
+ #include <fstream>
+ #include <string>
++#include <cstdint>
+ 
+ namespace spring {
\ No newline at end of file
diff --git a/recipes/spring/build.sh b/recipes/spring/build.sh
index 5ef7049c7586e..6158dd35de9b4 100644
--- a/recipes/spring/build.sh
+++ b/recipes/spring/build.sh
@@ -8,7 +8,7 @@ export CXXPATH=${PREFIX}/include
 export CFLAGS="$CFLAGS -I$PREFIX/include"
 export CXXFLAGS="$CFLAGS -I$PREFIX/include"
 export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
-if [ $(arch) == aarch64 ]; then
+if [ $(arch) == "aarch64" ]; then
    cmake ..
   else
       cmake -Dspring_optimize_for_portability=ON ..

From f47b8a217d6ecb261a33dd2e3e84a5c32cc44d72 Mon Sep 17 00:00:00 2001
From: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Date: Wed, 30 Oct 2024 14:29:22 -0500
Subject: [PATCH 5/6] add run_exports

---
 recipes/spring/meta.yaml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/recipes/spring/meta.yaml b/recipes/spring/meta.yaml
index d45cfd61ca5c9..48d11ed9e93a0 100644
--- a/recipes/spring/meta.yaml
+++ b/recipes/spring/meta.yaml
@@ -7,6 +7,8 @@ package:
 build:
   number: 3
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('spring', max_pin="x") }}
 
 source:
   url: https://github.com/shubhamchandak94/Spring/archive/v{{ version }}.tar.gz
@@ -26,5 +28,6 @@ about:
   home: https://github.com/shubhamchandak94/Spring
   license: Free for non-commercial use
   license_file: license.pdf
-  summary: Spring is a compression tool for Fastq files
+  summary: "Spring is a compression tool for Fastq files."
+  dev_url: https://github.com/shubhamchandak94/Spring
 

From 4de67848d62f1b76f7b09989b740f11a7beb72b2 Mon Sep 17 00:00:00 2001
From: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Date: Wed, 30 Oct 2024 14:34:11 -0500
Subject: [PATCH 6/6] add linux-aarch64 build

---
 recipes/spring/meta.yaml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/recipes/spring/meta.yaml b/recipes/spring/meta.yaml
index 48d11ed9e93a0..8dac430b3ae51 100644
--- a/recipes/spring/meta.yaml
+++ b/recipes/spring/meta.yaml
@@ -31,3 +31,6 @@ about:
   summary: "Spring is a compression tool for Fastq files."
   dev_url: https://github.com/shubhamchandak94/Spring
 
+extra:
+  additional-platforms:
+    - linux-aarch64