meta.yaml

{% set name = "mikado" %}
{% set version = "2.3.4" %}


package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/Mikado-{{ version }}.tar.gz
  sha256: 6d8844bacacc776214cf35cb148fa638c029b2972751d04fc1f7d0d8f3e961c2

build:
  number: 1
  skip: True   # [py < 37]
  entry_points:
    - mikado = Mikado.__main__:main
    - daijin = Mikado.daijin.__main__:main
  script: {{ PYTHON }} -m pip install . -vv

requirements:
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
  host:
    - cython
    - numpy
    - pip
    - python
    - scipy
  run:
    - biopython >=1.78
    - datrie >=0.8
    - drmaa
    - sqlite
    - hypothesis
    - marshmallow >=3.1.0
    - marshmallow-dataclass >=8.3.1
    - msgpack-python >=1.0.0
    - networkx >=2.3
    - {{ pin_compatible('numpy') }}
    - {{ pin_compatible('scipy') }}
    - pandas >=1.0
    - pyfaidx >=0.5.8
    - pysam >=0.15.3
    - pytest
    - python
    - pyyaml >=5.1.2
    - python-rapidjson >=1.0
    - six >=1.12.0
    - snakemake-minimal >=5.7.0
    - sqlalchemy >=1.4.0
    - sqlalchemy-utils >=0.34.1
    - tabulate >=0.8.5
    - toml >=0.10.0
    - typeguard >=2.9.1

test:
  imports:
    - Mikado
    - Mikado.configuration
    - Mikado.loci
    - rapidjson
  commands:
    - mikado --help
    - daijin --help
    #- python -c "import Mikado; Mikado.test(label='fast')"

about:
  home: https://github.com/EI-CoreBioinformatics/mikado
  summary: A Python3 annotation program to select the best gene model in each locus
  license: LGPL-3.0-or-later
  license_file: LICENSE.txt

extra:
  recipe-maintainers:
    - lucventurini
    - ljyanesm
    - gemygk
    - swarbred