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NEWS.md

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geomedb 2.1

This release fixes some package check issues and broken documentation links

geomedb 2.0

This release adds functionality for fetching fastq files in R from the SRA

  • listMarkers renamed to listLoci
  • queryFasta renamed to querySanger
  • fastqDump: Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible)
  • fasterqDump: Download or convert fastq data from NCBI Sequence Read Archive using multiple threads
  • prefetch: Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols

geomedb 1.0

This is a major release, which updates the package to work with the latest GeOMe changes.

  • queryMetadata:
    • query across multiple project & all data in GeOMe
    • query syntax has changed and now resembles SQL
    • query results are returned for each entity. No longer a flat table representation