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Load FASTA contigs into AlignmentRecords #571

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fnothaft opened this issue Feb 7, 2015 · 0 comments · Fixed by #580
Closed

Load FASTA contigs into AlignmentRecords #571

fnothaft opened this issue Feb 7, 2015 · 0 comments · Fixed by #580
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fnothaft commented Feb 7, 2015

This is pretty common for assembly related tasks. We should be able to go NucleotideContigFragment to AlignmentRecord (which is pretty straightforward), which also allows us to do FASTA to AlignmentRecord.
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Add support for converting contigs into reads fnothaft/adam
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