From dd63f81891f5196dd5b61b3d9d8df87e54b56b3e Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 21 Jan 2023 12:51:18 +0100 Subject: [PATCH 01/11] add advisory table --- _data/advisory.yml | 59 ++++++++++++++++++++++++++++++++++++++++++++ _pages/governance.md | 2 ++ 2 files changed, 61 insertions(+) create mode 100644 _data/advisory.yml diff --git a/_data/advisory.yml b/_data/advisory.yml new file mode 100644 index 00000000..05af2dd1 --- /dev/null +++ b/_data/advisory.yml @@ -0,0 +1,59 @@ +- group: steering + members: + +# - title: Quantitative MRI (qMRI) +# leads: + - name: Gilles de Hollander + - name: Kirstie Whitaker + git: "KirstieJane" + +# - title: Common Derivatives +# leads: + - name: Chris Markiewicz + git: effigies + +# - title: Arterial Spin Labeling (ASL) +# leads: + - name: Henk-Jan Mutsaerts + - name: Patricia Clement + - name: Jan Petr + - name: Marco Castellaro + +# - title: Electroencephalography (EEG) +# leads: + - name: Cyril Pernet + - name: Stefan Appelhoff + git: sappelhoff + - name: Robert Oostenveld + git: robertoostenveld + +# - title: Hierarchical Event Descriptor (HED) Tags +# leads: + - name: Chris Gorgolewski + +# - title: Positron Emission Tomography (PET) +# leads: + - name: Melanie Ganz + git: "melanieganz" + +# - title: intracranial Electroencephalography (iEEG) +# leads: + - name: Chris Holdgraf + - name: Dora Hermes + +# - title: Genetic information +# leads: + - name: Cyril R Pernet + git: CPernet + - name: Clara Moreau + - name: Thomas Nichols + +# - title: Near Infrared Spectroscopy (NIRS) +# leads: + - name: Robert Luke + - name: Luca Pollonini + +# - title: Microscopy +# leads: + - name: Marie-Hélène Bourget + - name: Julien Cohen-Adad diff --git a/_pages/governance.md b/_pages/governance.md index c8b97d6d..9d9497ba 100644 --- a/_pages/governance.md +++ b/_pages/governance.md @@ -235,6 +235,8 @@ This group contains previous BEP Working Group Leads. The purpose of this group is to provide advice and guidance to the BIDS Steering Group and the BEP Leads Group. +{% include members_table.html members=site.data.advisory %} + ### Other working/interest Groups A working/interest group can be established under the approval of the From 9ee0461b3f2d984804f2fcd831196d3608919f5f Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 21 Jan 2023 13:00:23 +0100 Subject: [PATCH 02/11] add gh usernames --- _data/advisory.yml | 21 ++++++++++++++++----- 1 file changed, 16 insertions(+), 5 deletions(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index 05af2dd1..fb5c9cb6 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -5,7 +5,7 @@ # leads: - name: Gilles de Hollander - name: Kirstie Whitaker - git: "KirstieJane" + git: KirstieJane # - title: Common Derivatives # leads: @@ -16,12 +16,14 @@ # leads: - name: Henk-Jan Mutsaerts - name: Patricia Clement + git: patsycle - name: Jan Petr - name: Marco Castellaro # - title: Electroencephalography (EEG) # leads: - name: Cyril Pernet + git: CPernet - name: Stefan Appelhoff git: sappelhoff - name: Robert Oostenveld @@ -30,30 +32,39 @@ # - title: Hierarchical Event Descriptor (HED) Tags # leads: - name: Chris Gorgolewski - + git: chrisgorgo # - title: Positron Emission Tomography (PET) # leads: - name: Melanie Ganz - git: "melanieganz" + git: melanieganz # - title: intracranial Electroencephalography (iEEG) # leads: - name: Chris Holdgraf + git: choldgraf - name: Dora Hermes + git: dorahermes + # - title: Genetic information # leads: - - name: Cyril R Pernet - git: CPernet + + # alread in eeg + # - name: Cyril R Pernet + # git: CPernet + - name: Clara Moreau - name: Thomas Nichols + git: nicholst # - title: Near Infrared Spectroscopy (NIRS) # leads: - name: Robert Luke + git: rob-luke - name: Luca Pollonini # - title: Microscopy # leads: - name: Marie-Hélène Bourget + git: mariehbourget - name: Julien Cohen-Adad From 5df68b7d83f9020d2df1d394fc3f5716bd81a823 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 21 Jan 2023 13:08:03 +0100 Subject: [PATCH 03/11] more gh usernames --- _data/advisory.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/_data/advisory.yml b/_data/advisory.yml index fb5c9cb6..c4b742df 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -4,6 +4,7 @@ # - title: Quantitative MRI (qMRI) # leads: - name: Gilles de Hollander + git: Gilles86 - name: Kirstie Whitaker git: KirstieJane @@ -15,10 +16,13 @@ # - title: Arterial Spin Labeling (ASL) # leads: - name: Henk-Jan Mutsaerts + git: HenkMutsaerts - name: Patricia Clement git: patsycle - name: Jan Petr + git: jan-petr - name: Marco Castellaro + git: marcocastellaro # - title: Electroencephalography (EEG) # leads: @@ -62,9 +66,11 @@ - name: Robert Luke git: rob-luke - name: Luca Pollonini + git: lpollonini # - title: Microscopy # leads: - name: Marie-Hélène Bourget git: mariehbourget - name: Julien Cohen-Adad + git: jcohenadad From 76ddbfd64a020473624bc68326c089e2a1582c05 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Tue, 31 Oct 2023 10:20:44 -0400 Subject: [PATCH 04/11] Apply suggestions from code review Co-authored-by: Yaroslav Halchenko --- _data/advisory.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index c4b742df..46ee5753 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -1,4 +1,4 @@ -- group: steering +- group: advisory members: # - title: Quantitative MRI (qMRI) @@ -35,8 +35,8 @@ # - title: Hierarchical Event Descriptor (HED) Tags # leads: - - name: Chris Gorgolewski - git: chrisgorgo + - name: Kay Robbins + git: vislab # - title: Positron Emission Tomography (PET) # leads: - name: Melanie Ganz From 08a14a6ab5b982806bee686d42eec4f7c290e12f Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Thu, 29 Feb 2024 12:21:08 +0100 Subject: [PATCH 05/11] Apply suggestions from code review Co-authored-by: Chris Markiewicz --- _data/advisory.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/_data/advisory.yml b/_data/advisory.yml index 46ee5753..fcba5060 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -37,10 +37,14 @@ # leads: - name: Kay Robbins git: vislab + - name: Dung Truong + git: dungscout96 # - title: Positron Emission Tomography (PET) # leads: - name: Melanie Ganz git: melanieganz + - name: Martin Nørgaard + git: mnoergaard # - title: intracranial Electroencephalography (iEEG) # leads: From 80301e2309d052398c57a00b9338cafacfc56264 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Thu, 29 Feb 2024 12:21:27 +0100 Subject: [PATCH 06/11] Update _data/advisory.yml --- _data/advisory.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/_data/advisory.yml b/_data/advisory.yml index fcba5060..f8eb669a 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -39,6 +39,7 @@ git: vislab - name: Dung Truong git: dungscout96 + # - title: Positron Emission Tomography (PET) # leads: - name: Melanie Ganz From ac04d4d7299da549cb50fb4e8bb047f454cf2758 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Thu, 29 Feb 2024 12:27:57 +0100 Subject: [PATCH 07/11] added motion BEP --- _data/advisory.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index f8eb669a..35636bc2 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -54,7 +54,6 @@ - name: Dora Hermes git: dorahermes - # - title: Genetic information # leads: @@ -79,3 +78,10 @@ git: mariehbourget - name: Julien Cohen-Adad git: jcohenadad + +# - title: Motion +# leads: + - name: Sein Jeung + git: sjeung + - name: Julius Welzel + git: jwelzel From ca14712bdd6ee921cf55efbf4456449b08b2acd3 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Thu, 29 Feb 2024 12:40:30 +0100 Subject: [PATCH 08/11] add note, add remaining completed beps, fix order --- _data/advisory.yml | 78 ++++++++++++++++++++++++++++++++-------------- 1 file changed, 54 insertions(+), 24 deletions(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index 35636bc2..5e96b8df 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -1,19 +1,29 @@ - group: advisory members: -# - title: Quantitative MRI (qMRI) +# NOTE: ONLY COMPLETED BEPs ARE INCLUDED IN THIS LIST +# SEE: https://bids.neuroimaging.io/get_involved.html#completed-beps +# +# FURTHERMORE, THE LEADS LISTED HERE NEED NOT HAVE BEEN THE ORIGINAL BEP LEADS. +# RATHER, THEY MAY BE REPLACEMENTS OF THE ORIGINAL BEP LEADS WHO DID NO LONGER +# WANT TO BE PART OF THE BIDS ADVISORY GROUP. + +# - title: BEP001 Quantitative MRI (qMRI) # leads: - name: Gilles de Hollander git: Gilles86 - name: Kirstie Whitaker git: KirstieJane -# - title: Common Derivatives +# - title: BEP002 BIDS Models Specification +# not included for now, as not merged into BIDS specification + +# - title: BEP003 Common Derivatives # leads: - name: Chris Markiewicz git: effigies -# - title: Arterial Spin Labeling (ASL) +# - title: BEP005 Arterial Spin Labeling (ASL) # leads: - name: Henk-Jan Mutsaerts git: HenkMutsaerts @@ -24,64 +34,84 @@ - name: Marco Castellaro git: marcocastellaro -# - title: Electroencephalography (EEG) +# - title: BEP006 Electroencephalography (EEG) # leads: - name: Cyril Pernet - git: CPernet + git: CPernet - name: Stefan Appelhoff - git: sappelhoff + git: sappelhoff - name: Robert Oostenveld - git: robertoostenveld + git: robertoostenveld -# - title: Hierarchical Event Descriptor (HED) Tags +# - title: BEP007 Hierarchical Event Descriptor (HED) Tags # leads: - name: Kay Robbins git: vislab - name: Dung Truong git: dungscout96 - -# - title: Positron Emission Tomography (PET) + +# - title: BEP008 Magnetoencephalography (MEG) +# leads: + - name: Guiomar Niso + git: guiomar + +# - title: BEP009 Positron Emission Tomography (PET) # leads: - name: Melanie Ganz git: melanieganz - name: Martin Nørgaard git: mnoergaard -# - title: intracranial Electroencephalography (iEEG) +# - title: BEP010 intracranial Electroencephalography (iEEG) # leads: - name: Chris Holdgraf git: choldgraf - name: Dora Hermes - git: dorahermes + git: dorahermes + +# - title: BEP013 Resting state fMRI derivatives +# not included for now, as not merged into BIDS specification -# - title: Genetic information +# - title: BEP015 Mapping file +# not included for now, as not merged into BIDS specification + +# - title: BEP018 Genetic information # leads: # alread in eeg # - name: Cyril R Pernet - # git: CPernet + # git: CPernet - name: Clara Moreau - name: Thomas Nichols git: nicholst -# - title: Near Infrared Spectroscopy (NIRS) +# - title: BEP019 DICOM Metadata +# not included for now, as not merged into BIDS specification + +# - title: BEP025 Medical Imaging Data Structure (MIDS) +# not included for now, as not merged into BIDS specification + +# - title: BEP027 BIDS Applications 2.0 +# not included for now, as not merged into BIDS specification + +# - title: BEP029 Virtual and physical motion data +# leads: + - name: Sein Jeung + git: sjeung + - name: Julius Welzel + git: jwelzel + +# - title: BEP030 Near Infrared Spectroscopy (NIRS) # leads: - name: Robert Luke git: rob-luke - name: Luca Pollonini - git: lpollonini + git: lpollonini -# - title: Microscopy +# - title: BEP031 Microscopy # leads: - name: Marie-Hélène Bourget git: mariehbourget - name: Julien Cohen-Adad git: jcohenadad - -# - title: Motion -# leads: - - name: Sein Jeung - git: sjeung - - name: Julius Welzel - git: jwelzel From d92cbdbef0402e087df9793750570b3c10d617cb Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Thu, 29 Feb 2024 15:04:44 +0100 Subject: [PATCH 09/11] add bids models and bids apps; add clara moreau github; add note for duplicate names --- _data/advisory.yml | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index 5e96b8df..5ccbeaff 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -7,6 +7,8 @@ # FURTHERMORE, THE LEADS LISTED HERE NEED NOT HAVE BEEN THE ORIGINAL BEP LEADS. # RATHER, THEY MAY BE REPLACEMENTS OF THE ORIGINAL BEP LEADS WHO DID NO LONGER # WANT TO BE PART OF THE BIDS ADVISORY GROUP. +# +# LEADS WHO ARE INVOLVED IN SEVERAL BEPS ARE ONLY LISTED ONCE # - title: BEP001 Quantitative MRI (qMRI) # leads: @@ -16,7 +18,9 @@ git: KirstieJane # - title: BEP002 BIDS Models Specification -# not included for now, as not merged into BIDS specification +# leads: + - name: Tal Yarkoni + git: tyarkoni # - title: BEP003 Common Derivatives # leads: @@ -77,12 +81,8 @@ # - title: BEP018 Genetic information # leads: - - # alread in eeg - # - name: Cyril R Pernet - # git: CPernet - - name: Clara Moreau + git: claramoreau9 - name: Thomas Nichols git: nicholst @@ -93,7 +93,9 @@ # not included for now, as not merged into BIDS specification # - title: BEP027 BIDS Applications 2.0 -# not included for now, as not merged into BIDS specification +# leads: + - name: Greg Kiar + git: gkiar # - title: BEP029 Virtual and physical motion data # leads: From eec4af9de0a3cb8fb2c24b084d2156178736f029 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Mon, 11 Mar 2024 14:08:57 +0100 Subject: [PATCH 10/11] Update _data/advisory.yml --- _data/advisory.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index 5ccbeaff..73bcd009 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -102,7 +102,7 @@ - name: Sein Jeung git: sjeung - name: Julius Welzel - git: jwelzel + git: JuliusWelzel # - title: BEP030 Near Infrared Spectroscopy (NIRS) # leads: From 8f25c09866a20a015daf483f473fe887478d32bd Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Mon, 11 Mar 2024 16:10:20 +0100 Subject: [PATCH 11/11] track multi beps for some authors see: https://github.com/bids-standard/bids-website/pull/272#discussion_r1507660026 --- _data/advisory.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/_data/advisory.yml b/_data/advisory.yml index 73bcd009..f64a5d92 100644 --- a/_data/advisory.yml +++ b/_data/advisory.yml @@ -8,7 +8,8 @@ # RATHER, THEY MAY BE REPLACEMENTS OF THE ORIGINAL BEP LEADS WHO DID NO LONGER # WANT TO BE PART OF THE BIDS ADVISORY GROUP. # -# LEADS WHO ARE INVOLVED IN SEVERAL BEPS ARE ONLY LISTED ONCE +# LEADS WHO ARE INVOLVED IN SEVERAL BEPS ARE ONLY LISTED ONCE, BUT THE "OTHER_BEPS" +# ATTRIBUTE MAY TRACK THEIR INVOLVEMENT IN OTHER BEPS. # - title: BEP001 Quantitative MRI (qMRI) # leads: @@ -26,6 +27,7 @@ # leads: - name: Chris Markiewicz git: effigies + other_beps: ["BEP002", "BEP027"] # - title: BEP005 Arterial Spin Labeling (ASL) # leads: @@ -42,6 +44,7 @@ # leads: - name: Cyril Pernet git: CPernet + other_beps: ["BEP018"] - name: Stefan Appelhoff git: sappelhoff - name: Robert Oostenveld