diff --git a/src/06-extensions.md b/src/06-extensions.md index 7e782a0f50..3ba135d048 100644 --- a/src/06-extensions.md +++ b/src/06-extensions.md @@ -7,16 +7,15 @@ This page lists some ways that you can get involved with the BIDS community. There are many ways to get involved with the BIDS community! ### The BIDS Starter Kit -If you're new -to the BIDS community and you'd like to learn a bit more, we recommend checking -out the [BIDS Starter Kit](https://github.com/bids-standard/bids-starter-kit/blob/master/README.md). -This has introductory information about the BIDS specification, tools in -the BIDS ecosystem, and how you can get involved. +If you're new to the BIDS community and you'd like to learn a bit more, we +recommend checking out the [BIDS Starter Kit](https://github.com/bids-standard/bids-starter-kit/blob/master/README.md). +This has introductory information about the BIDS specification, tools in the +BIDS ecosystem, and how you can get involved. ### The BIDS Contributor guide If you'd like to get involved more heavily in helping extend the BIDS -specification or develop tools for it, see the [BIDS Contributor Guide](https://docs.google.com/document/d/1pWmEEY-1-WuwBPNy5tDAxVJYQ9Een4hZJM06tQZg8X4/edit?usp%3Dsharing&sa=D&ust=1537468908724000). +specification or develop tools for it, see the [BIDS Contributor Guide](https://docs.google.com/document/d/1pWmEEY-1-WuwBPNy5tDAxVJYQ9Een4hZJM06tQZg8X4). It contains more in-depth information for getting involved with the BIDS community. @@ -26,33 +25,33 @@ The BIDS specification can be extended in a backwards compatible way and will evolve over time. These are accomplished with BIDS Extension Proposals (BEPs), which are community-driven processes. -Below is a table of currently-active BEPs. The *Extension label* column +Below is a table of currently-active BEPs. The "Extension label" column provides a direct link to the documentation. -| Extension label | Title | Moderators/leads | -| :---------------------------------------------------------------------------------------- | :-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | :------------------------------------------------------------- | -| [BEP001](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | [Structural acquisitions that include multiple contrasts (multi echo, flip angle, inversion time) sequences](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | Gilles de Hollander | -| [BEP002](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | [The BIDS Models Specification](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | Tal Yarkoni | -| [BEP003](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | [Common Derivatives](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | Chris Gorgolewski | -| [BEP004](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | [Susceptibility Weighted Imaging (SWI)](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | Fidel Alfaro Almagro | -| [BEP005](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | [Arterial Spin Labeling (ASL)](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | Henk-Jan Mutsaerts and Michael Chappell | -| [BEP009](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | [Positron Emission Tomography (PET)](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | Melanie Ganz | -| [BEP011](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | [The structural preprocessing derivatives](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | Andrew Hoopes | -| [BEP012](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | [The functional preprocessing derivatives](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | Camille Maumet and Chris Markiewicz | -| [BEP013](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | [The resting state fMRI derivatives](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | Steven Giavasis | -| [BEP014](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | [The affine transformations and nonlinear field warps](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | Oscar Esteban | -| [BEP015](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | [Mapping file](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | Eric Earl, Camille Maumet, and Vasudev Raguram | -| [BEP016](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | [The diffusion weighted imaging derivatives](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | Franco Pestilli and Oscar Esteban | -| [BEP017](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | [Generic BIDS connectivity data schema](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | Eugene Duff and Paul McCarthy | -| [BEP018](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | [Genetic information](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | Cyril R Pernet, Clara Moreau, and Thomas Nichols | -| [BEP019](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | [DICOM Metadata](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | Satrajit Ghosh | -| [BEP020](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | [Eye Tracking including Gaze Position and Pupil Size(ET)](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | Benjamin Gagl and Dejan Draschkow | -| [BEP021](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | [Common Electrophysiological Derivatives](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | Stefan Appelhoff, Cyril Pernet, Robert Oostenveld, Teon Brooks | -| [BEP022](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | [Magnetic Resonance Spectroscopy (MRS)](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | Dickson Wong | -| [BEP023](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | [PET Preprocessing derivatives](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | Martin Noergaard, Graham Searle, Melanie Ganz | -| [BEP024](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | [Computed Tomography scan (CT)](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | Hugo Boniface | -| [BEP025](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | [Medical Population Imaging Data structure (MIDS)](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | Jose Manuel Saborit Torres | -| [BEP026](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | [Microelectrode Recordings (MER)](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | Greydon Gilmore | +| Extension label | Title | Moderators/leads | +| :---------------------------------------------------------------------------------------- | :--------------------------------------------------------------------------------------------------------- | :------------------------------------------------------------- | +| [BEP001](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | Structural acquisitions that include multiple contrasts (multi echo, flip angle, inversion time) sequences | Gilles de Hollander | +| [BEP002](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | The BIDS Models Specification | Tal Yarkoni | +| [BEP003](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | Common Derivatives | Chris Gorgolewski | +| [BEP004](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | Susceptibility Weighted Imaging (SWI) | Fidel Alfaro Almagro | +| [BEP005](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | Arterial Spin Labeling (ASL) | Henk-Jan Mutsaerts and Michael Chappell | +| [BEP009](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | Positron Emission Tomography (PET) | Melanie Ganz | +| [BEP011](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | The structural preprocessing derivatives | Andrew Hoopes | +| [BEP012](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | The functional preprocessing derivatives | Camille Maumet and Chris Markiewicz | +| [BEP013](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | The resting state fMRI derivatives | Steven Giavasis | +| [BEP014](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | The affine transformations and nonlinear field warps | Oscar Esteban | +| [BEP015](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | Mapping file | Eric Earl, Camille Maumet, and Vasudev Raguram | +| [BEP016](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | The diffusion weighted imaging derivatives | Franco Pestilli and Oscar Esteban | +| [BEP017](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | Generic BIDS connectivity data schema | Eugene Duff and Paul McCarthy | +| [BEP018](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | Genetic information | Cyril R Pernet, Clara Moreau, and Thomas Nichols | +| [BEP019](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | DICOM Metadata | Satrajit Ghosh | +| [BEP020](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | Eye Tracking including Gaze Position and Pupil Size(ET) | Benjamin Gagl and Dejan Draschkow | +| [BEP021](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | Common Electrophysiological Derivatives | Stefan Appelhoff, Cyril Pernet, Robert Oostenveld, Teon Brooks | +| [BEP022](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | Magnetic Resonance Spectroscopy (MRS) | Dickson Wong | +| [BEP023](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | PET Preprocessing derivatives | Martin Noergaard, Graham Searle, Melanie Ganz | +| [BEP024](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | Computed Tomography scan (CT) | Hugo Boniface | +| [BEP025](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | Medical Population Imaging Data structure (MIDS) | Jose Manuel Saborit Torres | +| [BEP026](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | Microelectrode Recordings (MER) | Greydon Gilmore | When an extension reaches maturity it is merged into the main body of the specification. Below is a table of BEPs that have been merged in the main body @@ -66,4 +65,4 @@ of the specification. All of the extension ideas that are not backwards compatible and thus will have to wait for BIDS 2.0 are listed -[here](https://docs.google.com/document/d/1LEgsMiisGDe1Gv-hBp1EcLmoz7AlKj6VYULUgDD3Zdw) +[here](https://docs.google.com/document/d/1LEgsMiisGDe1Gv-hBp1EcLmoz7AlKj6VYULUgDD3Zdw).