Create individual Variant Call Format (VCF) files from multisample VCFs with unique variants.
Given a VCF file:
- Determine the sample ids referenced in this file (these will vary in name and number)
- Create a separate output VCF file for each sample id iff the sample id has unique variants
- Into each output file, place only the variants unique to this sample id (i.e., exclude anything that is common, because that won't be a likely culprit for clinical significance.)
- Install asdf for dependencies management
- Add the python plugin:
asdf plugin-add python - Install python:
asdf install - Install pip:
python setup/get-pip.py - Install pip requirements:
pip install -r requirements.txt - Run the test suite:
pytest -s