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paper.bib
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@article{samtools,
author = {Li, Heng and Handsaker, Bob and Wysoker, Alec and Fennell, Tim and Ruan, Jue and Homer, Nils and Marth, Gabor and Abecasis, Goncalo and Durbin, Richard},
title = {The Sequence Alignment/Map format and SAMtools},
journal = {Bioinformatics},
volume = {25},
number = {16},
pages = {2078},
year = {2009},
doi = {10.1093/bioinformatics/btp352},
URL = { + http://dx.doi.org/10.1093/bioinformatics/btp352},
eprint = {/oup/backfile/content_public/journal/bioinformatics/25/16/10.1093/bioinformatics/btp352/2/btp352.pdf}
}
@article{ococo,
archivePrefix = {arXiv},
arxivId = {1605.09070},
author = {Břinda, Karel and Boeva, Valentina and Kucherov, Gregory},
eprint = {1605.09070},
pages = {1-21},
title = {{Dynamic read mapping and online consensus calling for better variant detection}},
url = {http://arxiv.org/abs/1605.09070},
year = {2016}
}
@article{bwa,
author = {Li, Heng and Durbin, Richard},
title = {Fast and accurate short read alignment with Burrows–Wheeler transform},
journal = {Bioinformatics},
volume = {25},
number = {14},
pages = {1754},
year = {2009},
doi = {10.1093/bioinformatics/btp324},
URL = {http://dx.doi.org/10.1093/bioinformatics/btp324},
eprint = {/oup/backfile/content_public/journal/bioinformatics/25/14/10.1093/bioinformatics/btp324/2/btp324.pdf}
}
@article{segemehl,
author = {Otto, Christian and Stadler, Peter F. and Hoffmann, Steve},
title = {Lacking alignments? The next-generation sequencing mapper segemehl revisited},
journal = {Bioinformatics},
volume = {30},
number = {13},
pages = {1837},
year = {2014},
doi = {10.1093/bioinformatics/btu146},
URL = {http://dx.doi.org/10.1093/bioinformatics/btu146},
eprint = {/oup/backfile/content_public/journal/bioinformatics/30/13/10.1093_bioinformatics_btu146/2/btu146.pdf}
}