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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>Beatriz Manso</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0">
<link href="/assets/base.css" media="screen" rel="stylesheet" type="text/css" />
<script src="/assets/modernizr.js" type="text/javascript"></script>
</head>
<body>
<div class="wrapper">
<div class="profile">
<section class="profile-masthead" id="masthead">
<header class="profile-logo">
<div class="profile-logo-image">
<img alt="Profile pic " src="/images/profile_photo.jpeg" />
</div>
<div class="profile-name">
<h1>Beatriz Manso</h1>
</div>
</header>
<aside class="profile-summary">
<div class="summary-location summary-module">
<a href="BeatrizMcv.pdf">CV</a>
<a href="http://github.com/beatrizmclm">GitHub</a>
<a href="https://www.linkedin.com/in/beatriz-manso/">LinkedIn</a>
</div>
</aside>
</section>
<section class="profile-content" id="content">
<!-- TODO header? -->
<div class="profile-description">
<p>This is my portfolio where I showcase the practical work I did during my MSc in Bioinformatics.</p>
</div>
<article class="profile-menu" id="menu">
<nav class="menu-navigation">
<ul class="menu-navigation-list">
<li class="menu-navigation-list-item"><a href="#- bioinformatics & genome analysis">- Bioinformatics & Genome Analysis</a></li>
<li class="menu-navigation-list-item"><a href="#- machine learning">- Machine Learning</a></li>
<li class="menu-navigation-list-item"><a href="#- bioinformatics & functional genomics">- Bioinformatics & Functional Genomics</a></li>
<li class="menu-navigation-list-item"><a href="#- data science for bioinformatics">- Data Science for Bioinformatics</a></li>
</ul>
</nav>
<div id="- bioinformatics & genome analysis" class="menu-category">
<h3 class="menu-category-name">- Bioinformatics & Genome Analysis</h3>
<ol class="menu-category-list">
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">1.RNASeq_Data_Access_in_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/1.RNASeq_Data_Access_in_R/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/1.RNASeq_Data_Access_in_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Download SRA and FastQ files in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">2.NGS_QC_analysis_and_alignment_in_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/2.NGS_QC_analysis_and_alignment_in_R/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/2.NGS_QC_analysis_and_alignment_in_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Quality control and processing of NGS data</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">3.Variant_Call_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/3.Variant_Call_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/3.Variant_Call_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">Identifying single nucleotide polymorphisms (SNPs) and small insertions and deletion (indels) from next generation sequencing data</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">4.RNA-Seq_Expression_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/4.RNA-Seq_Expression_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/4.RNA-Seq_Expression_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">Breaking down the steps of a typical RNA-seq analysis</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">5.Class_Prediction_Analysis_Gene_Expression_Data_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/5.Class_Prediction_Analysis_Gene_Expression_Data_R/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/5.Class_Prediction_Analysis_Gene_Expression_Data_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Identification of transcript isoforms, gene fusions, and single nucleotide variations</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">6.RNA-seq_Analysis_DGE-CGE</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/6.RNA-seq_Analysis_DGE-CGE/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/6.RNA-seq_Analysis_DGE-CGE" target="_blank">GitHub</a></span>
<p class="menu-item-description">Differential Gene Expression and Consistent Gene Differential Expression analysis</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">7.Microarray_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/7.Microarray_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/7.Microarray_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">Study gene expression from Microarrays in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">8.eQTL_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/8.eQTL_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/8.eQTL_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">Identify allelic variants associated with gene expression on the basis that a proportion of transcripts are under genetic control.</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">9.ChIP-seq_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/9.ChIP-seq_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/9.ChIP-seq_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">10.DNA_Methylation_Analysis</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/10.DNA_Methylation_Analysis/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/10.DNA_Methylation_Analysis" target="_blank">GitHub</a></span>
<p class="menu-item-description">Study of chromosomal patterns of DNA or histone modification by methyl groups.</p>
</div>
</li>
</ol>
</div>
<div id="- machine learning" class="menu-category">
<h3 class="menu-category-name">- Machine Learning</h3>
<ol class="menu-category-list">
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">Machine_Learning_Global_Covid_Dataset</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/Machine_Learning_Global_Covid_Dataset/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/Machine_Learning_Global_Covid_Dataset" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">Machine_Learning_Brazil_Covid_Dataset</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/Machine_Learning_Brazil_Covid_Dataset/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/Machine_Learning_Brazil_Covid_Dataset" target="_blank">GitHub</a></span>
</div>
</li>
</ol>
</div>
<div id="- bioinformatics & functional genomics" class="menu-category">
<h3 class="menu-category-name">- Bioinformatics & Functional Genomics</h3>
<ol class="menu-category-list">
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">1.DNA_and_RNA_analysis_using_Biomart</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/1.DNA_and_RNA_analysis_using_Biomart" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/1.DNA_and_RNA_analysis_using_Biomart" target="_blank">GitHub</a></span>
<p class="menu-item-description">Fundamentals of DNA and RNA analysis - Using BioMart</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">2.DNA_Repeats</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/2.DNA_Repeats/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/2.DNA_Repeats" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">3.Basic_Local_Alignment_Search_Tool</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/3.Basic_Local_Alignment_Search_Tool" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/3.Basic_Local_Alignment_Search_Tool" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">4.Pairwise_Alignment</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/4.Pairwise_Alignment" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/4.Pairwise_Alignment" target="_blank">GitHub</a></span>
<p class="menu-item-description">Identify regions of similarity that may indicate functional, structural and/or evolutionary relationships between two biological sequences</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">5.Foensic_Phylogenetic_Analysis_with_SeaView</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/5.Foensic_Phylogenetic_Analysis_with_SeaView/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/5.Foensic_Phylogenetic_Analysis_with_SeaView" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">6.Phylogenetic_Analysis_with_MEGA</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/6.Phylogenetic_Analysis_with_MEGA/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/6.Phylogenetic_Analysis_with_MEGA" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">7.Protein_Analysis_and_proteomics</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/7.Protein_Analysis_and_proteomics/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/7.Protein_Analysis_and_proteomics" target="_blank">GitHub</a></span>
<p class="menu-item-description">Analyse proteins using databases such as UniProt, InterPro through the biomaRt package.</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">8.Protein_Structure_Analysis_and_Modelling</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/8.Protein_Structure_Analysis_and_Modelling/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/8.Protein_Structure_Analysis_and_Modelling" target="_blank">GitHub</a></span>
</div>
</li>
</ol>
</div>
<div id="- data science for bioinformatics" class="menu-category">
<h3 class="menu-category-name">- Data Science for Bioinformatics</h3>
<ol class="menu-category-list">
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">1.Object_Oriented_Programming</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/1.Object_Oriented_Programming/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/1.Object_Oriented_Programming" target="_blank">GitHub</a></span>
<p class="menu-item-description">Introduction to Object-Oriented Programming in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">2.Biopython_and_Python_Markdown</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/2.Biopython_and_Python_Markdown/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/2.Biopython_and_Python_Markdown" target="_blank">GitHub</a></span>
<p class="menu-item-description">How to use Python Markdown</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">3.R_markdown</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/3.R_markdown/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/3.R_markdown" target="_blank">GitHub</a></span>
<p class="menu-item-description">How to use R Markdown</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">4.Biopython_Sequence_Objects_Part_1</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/4.Biopython_Sequence_Objects_Part_1" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/4.Biopython_Sequence_Objects_Part_1" target="_blank">GitHub</a></span>
<p class="menu-item-description">Biopython Sequence Objects Part 1 with Jupiter Notebook</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info has-no-meta-content">
<h4 class="menu-item-name">5.Version_Control</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/5.Version_Control" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/5.Version_Control" target="_blank">GitHub</a></span>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">6.BioPython_Sequence_Objects_Part_2</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/6.BioPython_Sequence_Objects_Part_2" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/6.BioPython_Sequence_Objects_Part_2" target="_blank">GitHub</a></span>
<p class="menu-item-description">BioPython Sequence Objects Part 2 with Jupiter Notebook</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">7.Biopython_Sequence_Annotation</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/7.Biopython_Sequence_Annotation" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/7.Biopython_Sequence_Annotation" target="_blank">GitHub</a></span>
<p class="menu-item-description">Biopython Sequence Annotation with Jupiter Notebook</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">8.Biopython_Sequence_Input-Output</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/8.Biopython_Sequence_Input-Output/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/8.Biopython_Sequence_Input-Output" target="_blank">GitHub</a></span>
<p class="menu-item-description">Biopython Sequence Input/Outputwith Jupiter Notebook</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">9.R_Functions_and_Control_Structures</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/9.R_Functions_and_Control_Structures" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/9.R_Functions_and_Control_Structures" target="_blank">GitHub</a></span>
<p class="menu-item-description">R Functions and Control Structures</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">10.Data_Visualisation_in_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/10.Data_Visualisation_in_R/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/10.Data_Visualisation_in_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Bioinformatics, data visualisation techniques for analysis of massive amounts of genomics information in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">11.BLAST_and_MSA_in_Biopython</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/11.BLAST_and_MSA_in_Biopython" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/11.BLAST_and_MSA_in_Biopython" target="_blank">GitHub</a></span>
<p class="menu-item-description">Writing CLI scripts to integrate BLAST searches into your pipelines.</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">12.Unsupervised_Machine_Learning_in_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/12.Unsupervised_Machine_Learning_in_R" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/12.Unsupervised_Machine_Learning_in_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Exploratory Data Analysis and Unsupervised Machine Learning in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">13.Unsupervised_Machine_Learning_in_Python</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/13.Unsupervised_Machine_Learning_in_Python/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/13.Unsupervised_Machine_Learning_in_Python" target="_blank">GitHub</a></span>
<p class="menu-item-description">Unsupervised Machine Learning in Python</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">14.Supervised_Machine_Learning_in_R</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/14.Supervised_Machine_Learning_in_R/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/14.Supervised_Machine_Learning_in_R" target="_blank">GitHub</a></span>
<p class="menu-item-description">Supervised Machine Learning in R</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">15.Supervised_Machine_Learning_in_Python</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/15.Supervised_Machine_Learning_in_Python/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/15.Supervised_Machine_Learning_in_Python" target="_blank">GitHub</a></span>
<p class="menu-item-description">Supervised Machine Learning in Python</p>
</div>
</li>
<li class="menu-item">
<div class="menu-item-info">
<h4 class="menu-item-name">16.Operations_on_Genomic_Intervals_and_Genome_Arithmetic</h4>
<span class="menu-item-price"><a href="https://beatrizmclm.github.io/16.Operations_on_Genomic_Intervals_and_Genome_Arithmetic/" target="_blank">Website</a> · <a href="https://github.com/beatrizmclm/16.Operations_on_Genomic_Intervals_and_Genome_Arithmetic" target="_blank">GitHub</a></span>
<p class="menu-item-description">Using the Bioconductor GenomicRanges package in R for operations on genomic intervals and genome arithmetic</p>
</div>
</li>
</ol>
</div>
<a id="btn-view-full-menu" class="btn-view-full-menu" href="http://github.com/beatrizmclm">View full list of repositories</a>
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