Dockerfile

FROM rocker/geospatial:4.1

WORKDIR /srv/shiny-server

# system libraries of general use
RUN apt-get update && apt-get upgrade -y && apt-get install -y --no-install-recommends \
    libsodium-dev \
#    libmariadbclient-dev \
    libudunits2-dev \
#    libgdal-dev \
#    libproj-dev \
    vim \
    curl \
    git \
    fonts-roboto \
    ghostscript \
    libssl-dev \
    libxml2-dev \
    gdebi-core \
  && apt-get clean \
  && rm -rf /var/lib/apt/lists/ \
  ## Upgrade shiny server
  && wget --no-verbose https://download3.rstudio.org/ubuntu-14.04/x86_64/VERSION -O "version.txt" \
  && VERSION=$(cat version.txt) \
  && wget https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-$VERSION-amd64.deb \
  && wget --no-verbose "https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-$VERSION-amd64.deb" -O ss-latest.deb \
  && gdebi -n ss-latest.deb \
  && rm -f version.txt ss-latest.deb \
  && install2.r --error tinytex \
  ## Admin-based install of TinyTeX:
  && wget -qO- \
    "https://github.com/yihui/tinytex/raw/main/tools/install-unx.sh" | \
    sh -s - --admin --no-path \
  && mv ~/.TinyTeX /opt/TinyTeX \
  && if /opt/TinyTeX/bin/*/tex -v | grep -q 'TeX Live 2018'; then \
      ## Patch the Perl modules in the frozen TeX Live 2018 snapshot with the newer
      ## version available for the installer in tlnet/tlpkg/TeXLive, to include the
      ## fix described in https://github.com/yihui/tinytex/issues/77#issuecomment-466584510
      ## as discussed in https://www.preining.info/blog/2019/09/tex-services-at-texlive-info/#comments
      wget -P /tmp/ ${CTAN_REPO}/install-tl-unx.tar.gz \
      && tar -xzf /tmp/install-tl-unx.tar.gz -C /tmp/ \
      && cp -Tr /tmp/install-tl-*/tlpkg/TeXLive /opt/TinyTeX/tlpkg/TeXLive \
      && rm -r /tmp/install-tl-*; \
    fi \
  && /opt/TinyTeX/bin/*/tlmgr path add \
  && tlmgr install ae colortbl environ fancyhdr fontaxes grfext inconsolata listings makecell metafont mfware multirow parskip pdfcrop pdflscape ragged2e roboto setspace tabu tex threeparttable threeparttablex trimspaces ulem varwidth wrapfig \
  && tlmgr path add \
  && Rscript -e "tinytex::r_texmf()" \
  && chown -R root:staff /opt/TinyTeX \
  && chmod -R g+w /opt/TinyTeX \
  && chmod -R g+wx /opt/TinyTeX/bin \
  && echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
  && install2.r --error PKI \
  && cd /tmp/ \
  && wget https://github.com/jgm/pandoc/releases/download/2.16.2/pandoc-2.16.2-1-amd64.deb \
  && DEB="/tmp/pandoc-2.16.2-1-amd64.deb" \
  && sudo dpkg -i $DEB \
  && rm -rf /srv/shiny-server/

COPY ./ /srv/shiny-server/

RUN R -e "install.packages('remotes', repos = c(CRAN = 'https://cloud.r-project.org'))" \
    && R -e "remotes::install_github('rstudio/renv@0.15.4')" \
    && R -e "setwd('/srv/shiny-server/'); renv::restore();"

EXPOSE 3838