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Releases: bbuchfink/diamond

DIAMOND v0.8.32

15 Jan 20:30
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  • improved speed and sensitivity
  • fixed an issue that could cause too high memory usage in certain cases

DIAMOND v0.8.31

31 Dec 14:34
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  • Added compositional score adjustments (option --comp-based-stats (0,1)). This is a useful feature for filtering false positive hits and is enabled by default.
  • Removed --single-domain option and replaced by --max-hsps, to set the maximum number of Hsps per query/subject pair, to be consistent with BLAST. This option is set to 1 by default as getting more than 1 Hsp per subject seems to be confusing users.
  • Added option --no-self-hits to filter identical self-hits.

DIAMOND v0.8.30

26 Dec 15:56
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  • slightly improved sensitivity
  • added option to report unaligned queries: --unal (0=no, 1=yes)
  • pairwise, XML and SAM format will report unaligned queries by default
  • added option to filter alignments by subject cover (--subject-cover)

DIAMOND v0.8.29

12 Dec 11:21
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  • fixed an issue that could cause a crash when using view on incomplete DAA files

DIAMOND v0.8.28

25 Nov 13:55
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  • slightly improved sensitivity
  • added support for the BLAST pairwise format (option -f 0)

DIAMOND v0.8.27

18 Nov 11:34
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Added support for gzip compressed files containing multiple gzip streams.

DIAMOND v0.8.26

04 Nov 10:14
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  • The program now compiles as generic C++ code and thus can be used on hardware platforms other than the Intel/AMD x86-64.
  • Added option to write unaligned queries to file (--un).

DIAMOND v0.8.25

31 Oct 15:16
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  • fixed a bug with the qseq field in the blast tabular format
  • added qtitle and btop fields to the blast tabular format
  • fixed a bug that could cause a crash when passing a nonexistant input file
  • fixed an issue that could cause unexpectedly long runtimes in certain cases

DIAMOND v0.8.24

13 Oct 18:25
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Added output of line numbers for errors that occur while reading the input file.

DIAMOND v0.8.23

07 Oct 16:53
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Added option to change the genetic code used for translation of query in blastx mode (option --query-gencode, see here for a list of possible values: https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi).