Releases: bbuchfink/diamond
Releases · bbuchfink/diamond
DIAMOND v0.8.32
- improved speed and sensitivity
- fixed an issue that could cause too high memory usage in certain cases
DIAMOND v0.8.31
- Added compositional score adjustments (option --comp-based-stats (0,1)). This is a useful feature for filtering false positive hits and is enabled by default.
- Removed --single-domain option and replaced by --max-hsps, to set the maximum number of Hsps per query/subject pair, to be consistent with BLAST. This option is set to 1 by default as getting more than 1 Hsp per subject seems to be confusing users.
- Added option --no-self-hits to filter identical self-hits.
DIAMOND v0.8.30
- slightly improved sensitivity
- added option to report unaligned queries:
--unal
(0=no, 1=yes) - pairwise, XML and SAM format will report unaligned queries by default
- added option to filter alignments by subject cover (
--subject-cover
)
DIAMOND v0.8.29
- fixed an issue that could cause a crash when using view on incomplete DAA files
DIAMOND v0.8.28
- slightly improved sensitivity
- added support for the BLAST pairwise format (option -f 0)
DIAMOND v0.8.27
Added support for gzip compressed files containing multiple gzip streams.
DIAMOND v0.8.26
- The program now compiles as generic C++ code and thus can be used on hardware platforms other than the Intel/AMD x86-64.
- Added option to write unaligned queries to file (--un).
DIAMOND v0.8.25
- fixed a bug with the qseq field in the blast tabular format
- added qtitle and btop fields to the blast tabular format
- fixed a bug that could cause a crash when passing a nonexistant input file
- fixed an issue that could cause unexpectedly long runtimes in certain cases
DIAMOND v0.8.24
Added output of line numbers for errors that occur while reading the input file.
DIAMOND v0.8.23
Added option to change the genetic code used for translation of query in blastx mode (option --query-gencode
, see here for a list of possible values: https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi).