python-package.yml

## This workflow will install Python dependencies using mamba, run tests and check pre-commit

name: Python package

on: [push, pull_request]

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false

    steps:
    - uses: actions/checkout@v3
    - name: Set Swap Space
      uses: pierotofy/set-swap-space@master
      with:
        swap-size-gb: 10
    - uses: mamba-org/setup-micromamba@v1
      with:
        micromamba-version: 'latest'
        init-shell: bash
        generate-run-shell: true
        environment-name: testenv
        environment-file: environment.yaml
    - name: pre-commit
      uses: pre-commit/action@v3.0.0
    - name: Run pytest in micromamba environment
      run: |
        micromamba install -n testenv pytest
        micromamba run -n testenv pytest --import-mode=importlib .
  pipeline:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - uses: actions/checkout@v4
    - name: initialize conda
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: dropsonde_test
        auto-activate-base: false
        use-mamba: true
        miniforge-variant: Mambaforge
        miniforge-version: latest
    - name: install conda environment
      run:
        mamba env update -n dropsonde_test -f environment.yaml
    - name: run pydropsonde
      run: pydropsonde -c ./dropsonde.cfg