sagefit_slave.cpp

#include "data.h"
#include "cmd.h"
#include <fstream>
#include <vector>
#include <stdio.h>
#include <string.h>

#include "sagecal.h"
#include "utils.h"

using namespace std;
using namespace Data;

#ifndef LMCUT
#define LMCUT 40
#endif

char *residualFile;
char *uid;
void print_copyright(void) {
    cout<<"SAGECal-DALIUGE 0.0.1 (C) 2016-2017 CNLAB & ICRAR"<<endl;
}

void print_help(void) {
    cout << "Usage:" << endl;
    cout << "sagefit_slave -X inputFile -Y outputfile -Z residualFile -P params.txt -U uid" << endl;
    cout << "Report bugs to <wsl@cnlab.net>" << endl;

}

void ParseCmdLine(int ac, char **av) {
    print_copyright();
    char c;
    if (ac < 2) {
        print_help();
        exit(0);
    }
    while ((c = getopt(ac, av, "X:Y:Z:U:P:h")) != -1) {
        switch (c) {
            case 'X':
                Data::inputFile = optarg;
                break;
            case 'U':
                uid = optarg;
                break;
            case 'Z':
                residualFile = optarg;
                break;
            case 'P':
                Data::cmdFile = optarg;
                break;
            case 'Y':
                Data::outputFile = optarg;
                break;
            case 'h':
                print_help();
                exit(1);
            default:
                print_help();
                exit(1);
        }
    }

    ifstream infile(cmdFile);
    /* check if the file exists and readable */
    if (!infile.good()) {
        cout << "File " << Data::cmdFile << " does not exist." << endl;
        exit(1);
    }
    int argc=0;
    char **args = new char *[108];
    string buffer;
    if (infile.is_open()) {
        while (infile.good()) {
            std::getline(infile, buffer);
            if (buffer.length() > 0) {
                char *cmdline = new char[buffer.size() + 1];
                strcpy(cmdline, buffer.c_str());
                cmdline[buffer.size()] = '\0';
                char * pch = strtok (cmdline, " ");
                args[argc++] = pch;
                while ( pch!= NULL) {
                    pch = strtok (NULL, " ");
                    args[argc++] = pch;
                }
            }
        }

        for(int i=0;i<argc-2;i=i+2) {
            if( args[i][0]!= '-') {
                i = i - 1;
                continue;
            }
            char c = args[i][1];
            switch (c) {
                case 's':
                    Data::SkyModel = args[i+1];
                    break;
                case 'c':
                    Data::Clusters = args[i+1];
                    break;
                case 'p':
                    Data::solfile = args[i+1];
                    break;
                case 'g':
                    Data::max_iter = atoi(args[i+1]);
                    break;
                case 'a':
                    Data::DoSim = atoi(args[i+1]);
                    if (Data::DoSim < 0) { Data::DoSim = 1; }
                    break;
                case 'b':
                    Data::doChan = atoi(args[i+1]);
                    if (Data::doChan > 1) { Data::doChan = 1; }
                    break;
                case 'B':
                    Data::doBeam = atoi(args[i+1]);
                    if (Data::doBeam > 1) { Data::doBeam = 1; }
                    break;
                case 'S':
                    Data::shareDir = args[i+1];
                    break;
                case 'F':
                    Data::format = atoi(args[i+1]);
                    if (Data::format > 1) { Data::format = 1; }
                    break;
                case 'e':
                    Data::max_emiter = atoi(args[i+1]);
                    break;
                case 'l':
                    Data::max_lbfgs = atoi(args[i+1]);
                    break;
                case 'm':
                    Data::lbfgs_m = atoi(args[i+1]);
                    break;
                case 'j':
                    Data::solver_mode = atoi(args[i+1]);
                    break;
                case 't':
                    Data::TileSize = atoi(args[i+1]);
                    break;
                case 'I':
                    Data::DataField = args[i+1];
                    break;
                case 'O':
                    Data::OutField = args[i+1];
                    break;
                case 'n':
                    Data::Nt = atoi(args[i+1]);
                    break;
                case 'k':
                    Data::ccid = atoi(args[i+1]);
                    break;
                case 'o':
                    Data::rho = atof(args[i+1]);
                    break;
                case 'L':
                    Data::nulow = atof(args[i+1]);
                    break;
                case 'H':
                    Data::nuhigh = atof(args[i+1]);
                    break;
                case 'R':
                    Data::randomize = atoi(args[i+1]);
                    break;
                case 'W':
                    Data::whiten = atoi(args[i+1]);
                    break;
                case 'J':
                    Data::phaseOnly = atoi(args[i+1]);
                    break;
                case 'x':
                    Data::min_uvcut = atof(args[i+1]);
                    break;
                case 'y':
                    Data::max_uvcut = atof(args[i+1]);
                    break;
                case 'z':
                    Data::ignorefile = args[i+1];
                    break;
                case 'v':
                    Data::verbose = 1;
                    break;
                case 'D':
                    Data::DoDiag = atoi(args[i+1]);
                    if (Data::DoDiag < 0) { Data::DoDiag = 0; }
                    break;
            }
        }
        CheckParams(argc-1, args);
    }

}

void CheckParams(int ac, char **av) {

}

int main(int argc, char **argv) {
    ParseCmdLine(argc, argv);

    /*-----------------------------------------------input------------------------------------------------------------*/
    Data::IOData old_iodata, iodata;
    Data::LBeam beam;
    Data::MPIData mpiData;
    clus_source_t *carr;
    baseline_t *barr;
    double *arho, *arho0;
    int admm = get_last_iter(uid), start_iter = 0;

    openblas_set_num_threads(1);

    if(strcmp(residualFile,"%i1")==0) {
        cout << "admm = 0, no residualFile" << endl;
    }

    if(strcmp(residualFile,"%i1")!=0) {
        if (get_data_flag(Data::inputFile) != 0) {
            char *tmp = Data::inputFile;
            Data::inputFile = residualFile;
            residualFile = tmp;
        }
    }

    FILE *ip = 0;
    if ((ip = fopen(Data::inputFile,"rb")) == 0) {
        fprintf(stderr, "%s: %d: no input file\n", __FILE__, __LINE__);
        return 1;
    }

    load_iodata(ip, &old_iodata);
    load_mpidata(ip, &mpiData);
    int M = mpiData.Mo;
    int Mt = mpiData.M;

    load_share_iodata(Data::shareDir, old_iodata.msname, &iodata);
    cout << "iodata.N/M/Mt/Nms:" << iodata.N << "/" << iodata.M  << "/" << iodata.Mt << "/" << iodata.Nms
         << ", iodata.freq0:" << iodata.freq0/ 1e6<< "Mhz" << endl;
    Data::freeData(old_iodata);

    if (Data::doBeam) {
        load_share_beam(Data::shareDir,iodata.msname, &beam);
    }
    if ((barr = (baseline_t *) calloc((size_t) iodata.Nbase * iodata.tilesz, sizeof(baseline_t))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    load_share_barr(Data::shareDir,iodata.msname, &iodata, barr);

    if (ip) {
        fclose(ip);
    }

    if ((arho = (double *) calloc((size_t) M, sizeof(double))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    read_share_XYZ(Data::shareDir, iodata.msname, arho, iodata.M, "arho");

    if ((arho0 = (double *) calloc((size_t) M, sizeof(double))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    read_share_XYZ(Data::shareDir, iodata.msname, arho0, iodata.M, "arho0");

    /*----------------------------------------------------------------------------------------------------------------*/

    read_sky_cluster(Data::SkyModel, Data::Clusters, &carr, &M, iodata.freq0, iodata.ra0, iodata.dec0, Data::format);
    if (M <= 0) {
        fprintf(stderr, "%s: %d: no clusters to solve\n", __FILE__, __LINE__);
        exit(1);
    } else {
        printf("%s:Got %d clusters\n", __FILE__, M);
    }
    /* update cluster array with correct pointers to parameters */
    int ci = 0, ck = 0,cj = 0;
    for (ci = 0; ci < M; ci++) {
        if ((carr[ci].p = (int *) calloc((size_t) carr[ci].nchunk, sizeof(int))) == 0) {
            fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
            exit(1);
        }
        for (ck = 0; ck < carr[ci].nchunk; ck++) {
            carr[ci].p[ck] = cj * 8 * iodata.N;
            cj++;
        }
    }

    double *xbackup = 0;
    if (iodata.Nchan > 1 || Data::whiten) {
        if ((xbackup = (double *) calloc((size_t) iodata.Nbase * 8 * iodata.tilesz, sizeof(double))) == 0) {
            fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
            exit(1);
        }
        read_share_XYZ(Data::shareDir, iodata.msname, xbackup, iodata.Nbase * 8 * iodata.tilesz, "xbackup");
    }

    /*----------------------------------------------------------------------------------------------------------------*/
    complex double *coh;

    if ((coh = (complex double *) calloc((size_t)(iodata.M * iodata.Nbase * iodata.tilesz * 4), sizeof(complex double)))==0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    load_share_coh(Data::shareDir,iodata.msname, &iodata, coh);

    /* ADMM memory */
    double *Z, *Y;
    /* Z: (store B_f Z) 2Nx2 x M */
    if ((Z = (double *) calloc((size_t) iodata.N * 8 * Mt, sizeof(double))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    /* Y, 2Nx2 , M times */
    if ((Y = (double *) calloc((size_t) iodata.N * 8 * Mt, sizeof(double))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }

    read_share_XYZ(Data::shareDir, iodata.msname,Z, iodata.N * 8 * Mt, "Z");
    read_share_XYZ(Data::shareDir, iodata.msname,Y, iodata.N * 8 * Mt, "Y");

    double *p;
    /* parameters 8*N*M ==> 8*N*Mt */
    if ((p = (double *) calloc((size_t) iodata.N * 8 * Mt, sizeof(double))) == 0) {
        fprintf(stderr, "%s: %d: no free memory\n", __FILE__, __LINE__);
        exit(1);
    }
    read_share_XYZ(Data::shareDir, iodata.msname, p, iodata.N * 8 * Mt, "p");
    /*---------------------------------------------processing---------------------------------------------------------*/
    double res_0, res_1, res_00, res_01, mean_nu;
    int tilex = 0;

    load_share_res(Data::shareDir, iodata.msname, &start_iter, &res_0, &res_1, &res_00, &res_01, &mean_nu, &tilex);

    /* ADMM 1: minimize cost function */
    if (admm == 0) {
#ifndef HAVE_CUDA
        if (start_iter) {
            sagefit_visibilities(iodata.u, iodata.v, iodata.w, iodata.x, iodata.N, iodata.Nbase, iodata.tilesz,
                                 barr, carr, coh, M, Mt, iodata.freq0, iodata.deltaf, p, Data::min_uvcut,
                                 Data::Nt, (iodata.N <= LMCUT ? 2 * Data::max_emiter : 4 * Data::max_emiter),
                                 Data::max_iter, Data::max_lbfgs, Data::lbfgs_m, Data::gpu_threads,
                                 Data::linsolv,
                                 (iodata.N <= LMCUT && Data::solver_mode == SM_RTR_OSLM_LBFGS ? SM_OSLM_LBFGS
                                                                                              : (
                                          iodata.N <= LMCUT && (Data::solver_mode == SM_RTR_OSRLM_RLBFGS ||
                                                                Data::solver_mode == SM_NSD_RLBFGS)
                                          ? SM_OSLM_OSRLM_RLBFGS : Data::solver_mode)), Data::nulow,
                                 Data::nuhigh, Data::randomize, &mean_nu, &res_0, &res_1);
            start_iter = 0;
        } else {
            sagefit_visibilities(iodata.u, iodata.v, iodata.w, iodata.x, iodata.N, iodata.Nbase, iodata.tilesz,
                                 barr, carr, coh, M, Mt, iodata.freq0, iodata.deltaf, p, Data::min_uvcut,
                                 Data::Nt, Data::max_emiter, Data::max_iter, Data::max_lbfgs, Data::lbfgs_m,
                                 Data::gpu_threads, Data::linsolv, Data::solver_mode, Data::nulow, Data::nuhigh,
                                 Data::randomize, &mean_nu, &res_0, &res_1);
        }
#endif /* !HAVE_CUDA */
#ifdef HAVE_CUDA
        if (start_iter) {
                 sagefit_visibilities_dual_pt_flt(iodata.u,iodata.v,iodata.w,iodata.x,iodata.N,iodata.Nbase,iodata.tilesz,barr,carr,coh,M,Mt,iodata.freq0,iodata.deltaf,p,Data::min_uvcut,Data::Nt,(iodata.N<=LMCUT?2*Data::max_emiter:4*Data::max_emiter),Data::max_iter,Data::max_lbfgs,Data::lbfgs_m,Data::gpu_threads,Data::linsolv,(iodata.N<=LMCUT && Data::solver_mode==SM_RTR_OSLM_LBFGS?SM_OSLM_LBFGS:(iodata.N<=LMCUT && (Data::solver_mode==SM_RTR_OSRLM_RLBFGS||Data::solver_mode==SM_NSD_RLBFGS)?SM_OSLM_OSRLM_RLBFGS:Data::solver_mode)),Data::nulow,Data::nuhigh,Data::randomize,&mean_nu,&res_0,&res_1);
                 start_iter=0;
                } else {
                 sagefit_visibilities_dual_pt_flt(iodata.u,iodata.v,iodata.w,iodata.x,iodata.N,iodata.Nbase,iodata.tilesz,barr,carr,coh,M,Mt,iodata.freq0,iodata.deltaf,p,Data::min_uvcut,Data::Nt,Data::max_emiter,Data::max_iter,Data::max_lbfgs,Data::lbfgs_m,Data::gpu_threads,Data::linsolv,Data::solver_mode,Data::nulow,Data::nuhigh,Data::randomize,&mean_nu,&res_0,&res_1);
                }
#endif /* HAVE_CUDA */
        /* remember initial residual */
        if (admm == 0) {
            res_00 = res_0;
            res_01 = res_1;
        }
    } else { /* minimize augmented Lagrangian */
        /* since original data is now residual, get a fresh copy of data */
        if (iodata.Nchan > 1 || Data::whiten) {
            my_dcopy(iodata.Nbase * 8 * iodata.tilesz, xbackup, 1, iodata.x, 1);
        } else {
            /* only 1 channel is assumed */
            my_dcopy(iodata.Nbase * 8 * iodata.tilesz, iodata.xo, 1, iodata.x, 1);
        }

#ifndef HAVE_CUDA
        sagefit_visibilities_admm(iodata.u, iodata.v, iodata.w, iodata.x, iodata.N, iodata.Nbase, iodata.tilesz,
                                  barr, carr, coh, M, Mt, iodata.freq0, iodata.deltaf, p, Y, Z, Data::min_uvcut,
                                  Data::Nt, Data::max_emiter, Data::max_iter, 0, Data::lbfgs_m,
                                  Data::gpu_threads, Data::linsolv, Data::solver_mode, Data::nulow,
                                  Data::nuhigh, Data::randomize, arho, &mean_nu, &res_0, &res_1);
#endif /* !HAVE_CUDA */
#ifdef HAVE_CUDA
        //sagefit_visibilities_admm(iodata.u,iodata.v,iodata.w,iodata.x,iodata.N,iodata.Nbase,iodata.tilesz,barr,carr,coh,M,Mt,iodata.freq0,iodata.deltaf,p,Y,Z,Data::min_uvcut,Data::Nt,Data::max_emiter,Data::max_iter,0,Data::lbfgs_m,Data::gpu_threads,Data::linsolv,Data::solver_mode,Data::nulow,Data::nuhigh,Data::randomize,arho,&mean_nu,&res_0,&res_1);
                sagefit_visibilities_admm_dual_pt_flt(iodata.u,iodata.v,iodata.w,iodata.x,iodata.N,iodata.Nbase,iodata.tilesz,barr,carr,coh,M,Mt,iodata.freq0,iodata.deltaf,p,Y,Z,Data::min_uvcut,Data::Nt,Data::max_emiter,Data::max_iter,0,Data::lbfgs_m,Data::gpu_threads,Data::linsolv,Data::solver_mode,Data::nulow,Data::nuhigh,Data::randomize,arho,&mean_nu,&res_0,&res_1);
#endif /* HAVE_CUDA */
    }

    /* ADMM 2: send Y_i+rho J_i to master */
    /* calculate Y <= Y + rho J */
    if (admm == 0) {
        /* Y is set to 0 : so original is just rho * J*/
        my_dcopy(iodata.N * 8 * Mt, p, 1, Y, 1);
        /* scale by individual rho for each cluster */
        /* if rho<=0, do nothing */
        ck = 0;
        for (ci = 0; ci < M; ci++) {
            /* Y will be set to 0 if rho<=0 */
            my_dscal(iodata.N * 8 * carr[ci].nchunk, arho[ci], &Y[ck]);
            ck += iodata.N * 8 * carr[ci].nchunk;
        }
    } else {
        ck = 0;
        for (ci = 0; ci < M; ci++) {
            if (arho[ci] > 0.0) {
                my_daxpy(iodata.N * 8 * carr[ci].nchunk, &p[ck], arho[ci], &Y[ck]);
            }
            ck += iodata.N * 8 * carr[ci].nchunk;
//cout<<"Clus="<<ci<<" Chunk="<<carr[ci].nchunk<<" Rho="<<arho[ci]<<endl;
        }
    }
    /*--------------------------------------------write to share-----------------------------------------------------*/
    write_share_XYZ(Data::shareDir, iodata.msname, Y ,iodata.N * 8 * Mt, "Y");
    write_share_XYZ(Data::shareDir, iodata.msname, Z ,iodata.N * 8 * Mt, "Z");
    write_share_XYZ(Data::shareDir, iodata.msname, p, iodata.N * 8 * Mt, "p");
    dump_share_iodata(Data::shareDir,iodata.msname, &iodata);
    if (Data::doBeam) {
        dump_share_beam(Data::shareDir,iodata.msname,&iodata,&beam);
    }
    dump_share_barr(Data::shareDir,iodata.msname,&iodata,barr);
    dump_share_res(Data::shareDir, iodata.msname, &start_iter, &res_0, &res_1, &res_00, &res_01, &mean_nu, &tilex);
    if (iodata.Nchan > 1 || Data::whiten) {
        write_share_XYZ(Data::shareDir, iodata.msname, xbackup, iodata.Nbase * 8 * iodata.tilesz, "xbackup");
    }
    dump_share_coh(Data::shareDir,iodata.msname,&iodata,coh);
    /*--------------------------------------------output---------------------------------------------------------------*/
    FILE *op = 0;
    if ((op = fopen(Data::outputFile, "w")) == 0) {
        fprintf(stderr, "%s: %d: no output file\n", __FILE__, __LINE__);
        return 1;
    }
    dump_iodata(op, &iodata);
    fwrite(Y, sizeof(double), iodata.N * 8 * Mt, op);
    fwrite(Z, sizeof(double), iodata.N * 8 * Mt, op);
    if (op) {
        fclose(op);
    }
    /*------------------------------------free ----------------------------------------------------------------------*/
    exinfo_gaussian *exg;
    exinfo_disk *exd;
    exinfo_ring *exr;
    exinfo_shapelet *exs;
    for (ci = 0; ci < M; ci++) {
        free(carr[ci].ll);
        free(carr[ci].mm);
        free(carr[ci].nn);
        free(carr[ci].sI);
        free(carr[ci].p);
        free(carr[ci].ra);
        free(carr[ci].dec);
        for (cj = 0; cj < carr[ci].N; cj++) {
            /* do a proper typecast before freeing */
            switch (carr[ci].stype[cj]) {
                case STYPE_GAUSSIAN:
                    exg = (exinfo_gaussian *) carr[ci].ex[cj];
                    if (exg) free(exg);
                    break;
                case STYPE_DISK:
                    exd = (exinfo_disk *) carr[ci].ex[cj];
                    if (exd) free(exd);
                    break;
                case STYPE_RING:
                    exr = (exinfo_ring *) carr[ci].ex[cj];
                    if (exr) free(exr);
                    break;
                case STYPE_SHAPELET:
                    exs = (exinfo_shapelet *) carr[ci].ex[cj];
                    if (exs) {
                        if (exs->modes) {
                            free(exs->modes);
                        }
                        free(exs);
                    }
                    break;
                default:
                    break;
            }
        }
        free(carr[ci].ex);
        free(carr[ci].stype);
        free(carr[ci].sI0);
        free(carr[ci].f0);
        free(carr[ci].spec_idx);
        free(carr[ci].spec_idx1);
        free(carr[ci].spec_idx2);
    }
    free(carr);
    free(barr);
    free(p);
    if (iodata.Nchan > 1 || Data::whiten) {
        free(xbackup);
    }
    free(Z);
    free(Y);
    free(coh);
    free(arho);
    free(arho0);

    if (!doBeam) {
        Data::freeData(iodata);
    } else {
        Data::freeData(iodata, beam);
    }
    delete[] mpiData.freqs;
    cout << "Done." << endl;
    return 0;
}