Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

count-errors.py and CIGAR M operator #3

Open
peterjc opened this issue Feb 3, 2016 · 0 comments
Open

count-errors.py and CIGAR M operator #3

peterjc opened this issue Feb 3, 2016 · 0 comments

Comments

@peterjc
Copy link

peterjc commented Feb 3, 2016

Currently count-errors.py depends on CIGAR = and X operations, and cannot handle the older but widely used M operator (match or mismatch).

Ideally the script could be extended to handle these (slower), but at least a warning would be useful.

Issue spotted while following @mw55309's tutorial https://github.com/mw55309/EG_MinION_2016 where this can be used for LAST but not bwa mem.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@peterjc