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facing traceback and 'syntax error' while running this code - gemini load --cores 3 -t snpEff -v $NORMVCF $db #955

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monika7697 opened this issue Oct 28, 2021 · 0 comments

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@monika7697
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Traceback (most recent call last):
File "/home/monika_mohite/anaconda3/envs/python2/bin/gemini", line 4, in
import('pkg_resources').run_script('gemini==0.30.2', 'gemini')
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/init.py", line 666, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/init.py", line 1462, in run_script
exec(code, namespace, namespace)
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/EGG-INFO/scripts/gemini", line 7, in
gemini_main.main()
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_main.py", line 1249, in main
args.func(parser, args)
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_main.py", line 201, in load_fn
from gemini import gemini_load
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_load.py", line 11, in
from cluster_helper.cluster import cluster_view
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/cluster_helper/cluster.py", line 24, in
from ipyparallel import Client
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/ipyparallel/init.py", line 13, in
from traitlets.config.configurable import MultipleInstanceError
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/traitlets/config/init.py", line 6, in
from .application import *
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/traitlets/config/application.py", line 17, in
from decorator import decorator
File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/decorator.py", line 162
print('Error in generated code:', file=sys.stderr)
^
SyntaxError: invalid syntax

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