test.md

Untitled

{r setup, include=FALSE} knitr::opts_chunk$set(echo = TRUE)

TEST!!!

tr <- read.tree("/home/blubb/Documents/Workshops_PD/Ithaca_2018/example_data_ARBOR/CostaRicaHeliconia.tre.phy")
trait <- read.csv('/home/blubb/Documents/Workshops_PD/Ithaca_2018/example_data_ARBOR/Heliconia_phylogeny_matrix.csv')

if tree is supplied

tip labels of loaded tree

tr$tip.label

GitHub Documents

This is an R Markdown format used for publishing markdown documents to GitHub. When you click the Knit button all R code chunks are run and a markdown file (.md) suitable for publishing to GitHub is generated.

Including Code

You can include R code in the document as follows:

{r cars} summary(cars)

Including Plots

You can also embed plots, for example:

{r pressure, echo=FALSE} plot(pressure)

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.