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base.py
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base.py
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# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
# coding: utf-8
# pylint: disable=invalid-name, no-member, trailing-comma-tuple
"""ctypes library of mxnet and helper functions."""
from __future__ import absolute_import
import os
import sys
import ctypes
import atexit
import warnings
import inspect
import numpy as np
from . import libinfo
warnings.filterwarnings('default', category=DeprecationWarning)
__all__ = ['MXNetError']
#----------------------------
# library loading
#----------------------------
if sys.version_info[0] == 3:
string_types = str,
numeric_types = (float, int, np.generic)
integer_types = (int, np.int32, np.int64)
# this function is needed for python3
# to convert ctypes.char_p .value back to python str
py_str = lambda x: x.decode('utf-8')
else:
string_types = basestring,
numeric_types = (float, int, long, np.generic)
integer_types = (int, long, np.int32, np.int64)
py_str = lambda x: x
class _NullType(object):
"""Placeholder for arguments"""
def __repr__(self):
return '_Null'
_Null = _NullType()
class MXNetError(Exception):
"""Error that will be throwed by all mxnet functions."""
pass
class NotImplementedForSymbol(MXNetError):
"""Error: Not implemented for symbol"""
def __init__(self, function, alias, *args):
super(NotImplementedForSymbol, self).__init__()
self.function = function.__name__
self.alias = alias
self.args = [str(type(a)) for a in args]
def __str__(self):
msg = 'Function {}'.format(self.function)
if self.alias:
msg += ' (namely operator "{}")'.format(self.alias)
if self.args:
msg += ' with arguments ({})'.format(', '.join(self.args))
msg += ' is not implemented for Symbol and only available in NDArray.'
return msg
class NotSupportedForSparseNDArray(MXNetError):
"""Error: Not supported for SparseNDArray"""
def __init__(self, function, alias, *args):
super(NotSupportedForSparseNDArray, self).__init__()
self.function = function.__name__
self.alias = alias
self.args = [str(type(a)) for a in args]
def __str__(self):
msg = 'Function {}'.format(self.function)
if self.alias:
msg += ' (namely operator "{}")'.format(self.alias)
if self.args:
msg += ' with arguments ({})'.format(', '.join(self.args))
msg += ' is not supported for SparseNDArray and only available in NDArray.'
return msg
class MXCallbackList(ctypes.Structure):
"""Structure that holds Callback information. Passed to CustomOpProp."""
_fields_ = [
('num_callbacks', ctypes.c_int),
('callbacks', ctypes.POINTER(ctypes.CFUNCTYPE(ctypes.c_int))),
('contexts', ctypes.POINTER(ctypes.c_void_p))
]
def _load_lib():
"""Load library by searching possible path."""
lib_path = libinfo.find_lib_path()
lib = ctypes.CDLL(lib_path[0], ctypes.RTLD_LOCAL)
# DMatrix functions
lib.MXGetLastError.restype = ctypes.c_char_p
return lib
# version number
__version__ = libinfo.__version__
# library instance of mxnet
_LIB = _load_lib()
# type definitions
mx_uint = ctypes.c_uint
mx_float = ctypes.c_float
mx_float_p = ctypes.POINTER(mx_float)
mx_real_t = np.float32
NDArrayHandle = ctypes.c_void_p
FunctionHandle = ctypes.c_void_p
OpHandle = ctypes.c_void_p
CachedOpHandle = ctypes.c_void_p
SymbolHandle = ctypes.c_void_p
ExecutorHandle = ctypes.c_void_p
DataIterCreatorHandle = ctypes.c_void_p
DataIterHandle = ctypes.c_void_p
KVStoreHandle = ctypes.c_void_p
RecordIOHandle = ctypes.c_void_p
RtcHandle = ctypes.c_void_p
CudaModuleHandle = ctypes.c_void_p
CudaKernelHandle = ctypes.c_void_p
ProfileHandle = ctypes.c_void_p
#----------------------------
# helper function definition
#----------------------------
def check_call(ret):
"""Check the return value of C API call.
This function will raise an exception when an error occurs.
Wrap every API call with this function.
Parameters
----------
ret : int
return value from API calls.
"""
if ret != 0:
raise MXNetError(py_str(_LIB.MXGetLastError()))
if sys.version_info[0] < 3:
def c_str(string):
"""Create ctypes char * from a Python string.
Parameters
----------
string : string type
Python string.
Returns
-------
str : c_char_p
A char pointer that can be passed to C API.
Examples
--------
>>> x = mx.base.c_str("Hello, World")
>>> print x.value
Hello, World
"""
return ctypes.c_char_p(string)
def c_str_array(strings):
"""Create ctypes const char ** from a list of Python strings.
Parameters
----------
strings : list of string
Python strings.
Returns
-------
(ctypes.c_char_p * len(strings))
A const char ** pointer that can be passed to C API.
"""
arr = (ctypes.c_char_p * len(strings))()
arr[:] = strings
return arr
else:
def c_str(string):
"""Create ctypes char * from a Python string.
Parameters
----------
string : string type
Python string.
Returns
-------
str : c_char_p
A char pointer that can be passed to C API.
Examples
--------
>>> x = mx.base.c_str("Hello, World")
>>> print(x.value)
b"Hello, World"
"""
return ctypes.c_char_p(string.encode('utf-8'))
def c_str_array(strings):
"""Create ctypes const char ** from a list of Python strings.
Parameters
----------
strings : list of string
Python strings.
Returns
-------
(ctypes.c_char_p * len(strings))
A const char ** pointer that can be passed to C API.
"""
arr = (ctypes.c_char_p * len(strings))()
arr[:] = [s.encode('utf-8') for s in strings]
return arr
def c_array(ctype, values):
"""Create ctypes array from a Python array.
Parameters
----------
ctype : ctypes data type
Data type of the array we want to convert to, such as mx_float.
values : tuple or list
Data content.
Returns
-------
out : ctypes array
Created ctypes array.
Examples
--------
>>> x = mx.base.c_array(mx.base.mx_float, [1, 2, 3])
>>> print len(x)
3
>>> x[1]
2.0
"""
out = (ctype * len(values))()
out[:] = values
return out
def c_array_buf(ctype, buf):
"""Create ctypes array from a Python buffer.
For primitive types, using the buffer created with array.array is faster
than a c_array call.
Parameters
----------
ctype : ctypes data type
Data type of the array we want to convert to, such as mx_float.
buf : buffer type
Data content.
Returns
-------
out : ctypes array
Created ctypes array.
Examples
--------
>>> x = mx.base.c_array_buf(mx.base.mx_float, array.array('i', [1, 2, 3]))
>>> print len(x)
3
>>> x[1]
2.0
"""
return (ctype * len(buf)).from_buffer(buf)
def c_handle_array(objs):
"""Create ctypes const void ** from a list of MXNet objects with handles.
Parameters
----------
objs : list of NDArray/Symbol.
MXNet objects.
Returns
-------
(ctypes.c_void_p * len(objs))
A void ** pointer that can be passed to C API.
"""
arr = (ctypes.c_void_p * len(objs))()
arr[:] = [o.handle for o in objs]
return arr
def ctypes2buffer(cptr, length):
"""Convert ctypes pointer to buffer type.
Parameters
----------
cptr : ctypes.POINTER(ctypes.c_char)
Pointer to the raw memory region.
length : int
The length of the buffer.
Returns
-------
buffer : bytearray
The raw byte memory buffer.
"""
if not isinstance(cptr, ctypes.POINTER(ctypes.c_char)):
raise TypeError('expected char pointer')
res = bytearray(length)
rptr = (ctypes.c_char * length).from_buffer(res)
if not ctypes.memmove(rptr, cptr, length):
raise RuntimeError('memmove failed')
return res
def ctypes2numpy_shared(cptr, shape):
"""Convert a ctypes pointer to a numpy array.
The resulting NumPy array shares the memory with the pointer.
Parameters
----------
cptr : ctypes.POINTER(mx_float)
pointer to the memory region
shape : tuple
Shape of target `NDArray`.
Returns
-------
out : numpy_array
A numpy array : numpy array.
"""
if not isinstance(cptr, ctypes.POINTER(mx_float)):
raise RuntimeError('expected float pointer')
size = 1
for s in shape:
size *= s
dbuffer = (mx_float * size).from_address(ctypes.addressof(cptr.contents))
return np.frombuffer(dbuffer, dtype=np.float32).reshape(shape)
def build_param_doc(arg_names, arg_types, arg_descs, remove_dup=True):
"""Build argument docs in python style.
arg_names : list of str
Argument names.
arg_types : list of str
Argument type information.
arg_descs : list of str
Argument description information.
remove_dup : boolean, optional
Whether remove duplication or not.
Returns
-------
docstr : str
Python docstring of parameter sections.
"""
param_keys = set()
param_str = []
for key, type_info, desc in zip(arg_names, arg_types, arg_descs):
if key in param_keys and remove_dup:
continue
if key == 'num_args':
continue
param_keys.add(key)
ret = '%s : %s' % (key, type_info)
if len(desc) != 0:
ret += '\n ' + desc
param_str.append(ret)
doc_str = ('Parameters\n' +
'----------\n' +
'%s\n')
doc_str = doc_str % ('\n'.join(param_str))
return doc_str
def _notify_shutdown():
"""Notify MXNet about a shutdown."""
check_call(_LIB.MXNotifyShutdown())
atexit.register(_notify_shutdown)
def add_fileline_to_docstring(module, incursive=True):
"""Append the definition position to each function contained in module.
Examples
--------
# Put the following codes at the end of a file
add_fileline_to_docstring(__name__)
"""
def _add_fileline(obj):
"""Add fileinto to a object.
"""
if obj.__doc__ is None or 'From:' in obj.__doc__:
return
fname = inspect.getsourcefile(obj)
if fname is None:
return
try:
line = inspect.getsourcelines(obj)[-1]
except IOError:
return
obj.__doc__ += '\n\nFrom:%s:%d' % (fname, line)
if isinstance(module, str):
module = sys.modules[module]
for _, obj in inspect.getmembers(module):
if inspect.isbuiltin(obj):
continue
if inspect.isfunction(obj):
_add_fileline(obj)
if inspect.ismethod(obj):
_add_fileline(obj.__func__)
if inspect.isclass(obj) and incursive:
add_fileline_to_docstring(obj, False)
def _as_list(obj):
"""A utility function that converts the argument to a list if it is not already.
Parameters
----------
obj : object
Returns
-------
If `obj` is a list or tuple, return it. Otherwise, return `[obj]` as a
single-element list.
"""
if isinstance(obj, (list, tuple)):
return obj
else:
return [obj]
_OP_NAME_PREFIX_LIST = ['_contrib_', '_linalg_', '_sparse_', '_image_']
def _get_op_name_prefix(op_name):
"""
Check whether the given op_name starts with any words in `_OP_NAME_PREFIX_LIST`.
If found, return the prefix; else, return an empty string.
"""
for prefix in _OP_NAME_PREFIX_LIST:
if op_name.startswith(prefix):
return prefix
return ""
# pylint: enable=too-many-locals, invalid-name
def _init_op_module(root_namespace, module_name, make_op_func):
"""
Registers op functions created by `make_op_func` under
`root_namespace.module_name.[submodule_name]`,
where `submodule_name` is one of `_OP_SUBMODULE_NAME_LIST`.
Parameters
----------
root_namespace : str
Top level module name, `mxnet` in the current cases.
module_name : str
Second level module name, `ndarray` and `symbol` in the current cases.
make_op_func : function
Function for creating op functions for `ndarray` and `symbol` modules.
"""
plist = ctypes.POINTER(ctypes.c_char_p)()
size = ctypes.c_uint()
check_call(_LIB.MXListAllOpNames(ctypes.byref(size),
ctypes.byref(plist)))
op_names = []
for i in range(size.value):
op_names.append(py_str(plist[i]))
module_op = sys.modules["%s.%s.op" % (root_namespace, module_name)]
module_internal = sys.modules["%s.%s._internal" % (root_namespace, module_name)]
# contrib module in the old format (deprecated)
# kept here for backward compatibility
# use mx.nd.contrib or mx.sym.contrib from now on
contrib_module_name_old = "%s.contrib.%s" % (root_namespace, module_name)
contrib_module_old = sys.modules[contrib_module_name_old]
submodule_dict = {}
for op_name_prefix in _OP_NAME_PREFIX_LIST:
submodule_dict[op_name_prefix] =\
sys.modules["%s.%s.%s" % (root_namespace, module_name, op_name_prefix[1:-1])]
for name in op_names:
hdl = OpHandle()
check_call(_LIB.NNGetOpHandle(c_str(name), ctypes.byref(hdl)))
op_name_prefix = _get_op_name_prefix(name)
module_name_local = module_name
if len(op_name_prefix) > 0:
func_name = name[len(op_name_prefix):]
cur_module = submodule_dict[op_name_prefix]
module_name_local = "%s.%s.%s" % (root_namespace, module_name, op_name_prefix[1:-1])
elif name.startswith('_'):
func_name = name
cur_module = module_internal
else:
func_name = name
cur_module = module_op
function = make_op_func(hdl, name, func_name)
function.__module__ = module_name_local
setattr(cur_module, function.__name__, function)
cur_module.__all__.append(function.__name__)
if op_name_prefix == '_contrib_':
hdl = OpHandle()
check_call(_LIB.NNGetOpHandle(c_str(name), ctypes.byref(hdl)))
func_name = name[len(op_name_prefix):]
function = make_op_func(hdl, name, func_name)
function.__module__ = contrib_module_name_old
setattr(contrib_module_old, function.__name__, function)
contrib_module_old.__all__.append(function.__name__)
def _generate_op_module_signature(root_namespace, module_name, op_code_gen_func):
"""
Generate op functions created by `op_code_gen_func` and write to the source file
of `root_namespace.module_name.[submodule_name]`,
where `submodule_name` is one of `_OP_SUBMODULE_NAME_LIST`.
Parameters
----------
root_namespace : str
Top level module name, `mxnet` in the current cases.
module_name : str
Second level module name, `ndarray` and `symbol` in the current cases.
op_code_gen_func : function
Function for creating op functions for `ndarray` and `symbol` modules.
"""
def get_module_file(module_name):
"""Return the generated module file based on module name."""
path = os.path.dirname(__file__)
module_path = module_name.split('.')
module_path[-1] = 'gen_'+module_path[-1]
file_name = os.path.join(path, '..', *module_path) + '.py'
module_file = open(file_name, 'w')
dependencies = {'symbol': ['from ._internal import SymbolBase',
'from ..base import _Null'],
'ndarray': ['from ._internal import NDArrayBase',
'from ..base import _Null']}
module_file.write('# File content is auto-generated. Do not modify.'+os.linesep)
module_file.write('# pylint: skip-file'+os.linesep)
module_file.write(os.linesep.join(dependencies[module_name.split('.')[1]]))
return module_file
def write_all_str(module_file, module_all_list):
"""Write the proper __all__ based on available operators."""
module_file.write(os.linesep)
module_file.write(os.linesep)
all_str = '__all__ = [' + ', '.join(["'%s'"%s for s in module_all_list]) + ']'
module_file.write(all_str)
plist = ctypes.POINTER(ctypes.c_char_p)()
size = ctypes.c_uint()
check_call(_LIB.MXListAllOpNames(ctypes.byref(size),
ctypes.byref(plist)))
op_names = []
for i in range(size.value):
op_names.append(py_str(plist[i]))
module_op_file = get_module_file("%s.%s.op" % (root_namespace, module_name))
module_op_all = []
module_internal_file = get_module_file("%s.%s._internal"%(root_namespace, module_name))
module_internal_all = []
submodule_dict = {}
for op_name_prefix in _OP_NAME_PREFIX_LIST:
submodule_dict[op_name_prefix] =\
(get_module_file("%s.%s.%s" % (root_namespace, module_name,
op_name_prefix[1:-1])), [])
for name in op_names:
hdl = OpHandle()
check_call(_LIB.NNGetOpHandle(c_str(name), ctypes.byref(hdl)))
op_name_prefix = _get_op_name_prefix(name)
if len(op_name_prefix) > 0:
func_name = name[len(op_name_prefix):]
cur_module_file, cur_module_all = submodule_dict[op_name_prefix]
elif name.startswith('_'):
func_name = name
cur_module_file = module_internal_file
cur_module_all = module_internal_all
else:
func_name = name
cur_module_file = module_op_file
cur_module_all = module_op_all
code, _ = op_code_gen_func(hdl, name, func_name, True)
cur_module_file.write(os.linesep)
cur_module_file.write(code)
cur_module_all.append(func_name)
for (submodule_f, submodule_all) in submodule_dict.values():
write_all_str(submodule_f, submodule_all)
submodule_f.close()
write_all_str(module_op_file, module_op_all)
module_op_file.close()
write_all_str(module_internal_file, module_internal_all)
module_internal_file.close()