upgpkg: openmpi 4.0.2-3 fix deadlock running netcdf test with openmpi

open-mpi/ompi#7109

Author: anthraxx

openmpi/.SRCINFO

@@ -1,7 +1,7 @@
 pkgbase = openmpi
 	pkgdesc = High performance message passing library (MPI)
 	pkgver = 4.0.2
-	pkgrel = 2
+	pkgrel = 3
 	url = https://www.open-mpi.org
 	arch = x86_64
 	license = custom:OpenMPI
@@ -16,8 +16,11 @@ pkgbase = openmpi
 	optdepends = gcc-fortran: fortran support
 	options = staticlibs
 	source = https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-4.0.2.tar.bz2
+	source = openmpi-4.0.2-fix-calculation.patch::https://github.com/open-mpi/ompi/commit/41717c8b7318cedbb9ce070e82613ee0ed0205fc.patch
 	sha256sums = 900bf751be72eccf06de9d186f7b1c4b5c2fa9fa66458e53b77778dffdfe4057
+	sha256sums = 51b8606151bdc75cf7d34e94846a9213da3c347d3744ad19164917f7fc314166
 	sha512sums = 634d45d989f1e0b8848bfb4eb4527c7edd76d4fccd77a5f8d85a46a5822f97ba653adf13df857c87ae56a8117b4ae2d45ec24249c6ee41a562446d4112ddb770
+	sha512sums = 9eb105badb1007f61a5c7bc73acb54393dfa4e175f5eb6827000f111a64c9446c1df0e86e46e7442bebb139ce265f540f82fffffe82c7e1836d50e3d2c37d6ba
 
 pkgname = openmpi
 

openmpi/PKGBUILD

@@ -4,7 +4,7 @@
 
 pkgname=openmpi
 pkgver=4.0.2
-pkgrel=2
+pkgrel=3
 pkgdesc='High performance message passing library (MPI)'
 url='https://www.open-mpi.org'
 arch=('x86_64')
@@ -13,9 +13,17 @@ depends=('libltdl' 'hwloc' 'openssh' 'zlib' 'libnl')
 makedepends=('inetutils' 'valgrind' 'gcc-fortran')
 optdepends=('gcc-fortran: fortran support')
 options=('staticlibs')
-source=(https://www.open-mpi.org/software/ompi/v${pkgver%.*}/downloads/${pkgname}-${pkgver}.tar.bz2)
-sha256sums=('900bf751be72eccf06de9d186f7b1c4b5c2fa9fa66458e53b77778dffdfe4057')
-sha512sums=('634d45d989f1e0b8848bfb4eb4527c7edd76d4fccd77a5f8d85a46a5822f97ba653adf13df857c87ae56a8117b4ae2d45ec24249c6ee41a562446d4112ddb770')
+source=(https://www.open-mpi.org/software/ompi/v${pkgver%.*}/downloads/${pkgname}-${pkgver}.tar.bz2
+        openmpi-4.0.2-fix-calculation.patch::https://github.com/open-mpi/ompi/commit/41717c8b7318cedbb9ce070e82613ee0ed0205fc.patch)
+sha256sums=('900bf751be72eccf06de9d186f7b1c4b5c2fa9fa66458e53b77778dffdfe4057'
+            '51b8606151bdc75cf7d34e94846a9213da3c347d3744ad19164917f7fc314166')
+sha512sums=('634d45d989f1e0b8848bfb4eb4527c7edd76d4fccd77a5f8d85a46a5822f97ba653adf13df857c87ae56a8117b4ae2d45ec24249c6ee41a562446d4112ddb770'
+            '9eb105badb1007f61a5c7bc73acb54393dfa4e175f5eb6827000f111a64c9446c1df0e86e46e7442bebb139ce265f540f82fffffe82c7e1836d50e3d2c37d6ba')
+
+prepare() {
+  cd ${pkgname}-${pkgver}
+  patch -Np1 < ../openmpi-4.0.2-fix-calculation.patch
+}
 
 build() {
   cd ${pkgname}-${pkgver}