Molecule doesn't honor safe_files

[J-PC]

Prerequisites

• This was not already reported in the past (duplicate check)
• It does reproduce it with code from main branch (latest unreleased version)
• I include a minimal example for reproducing the bug
• The bug is not trivial, as for those a direct pull-request is preferred
• Running pip check does not report any conflicts
• I was able to reproduce the issue on a different machine
• The issue is not specific to any driver other than 'default' one

Environment

The environement is molecule 24.12.0 on Fedora 40.

What happened

Molecule doesn't honor the protected files/folders defined in the safe_files config parameter:
I tested the following configuration :

driver:
  name: default
  safe_files:
    - foo
    - test/bar
    - baz/

I tested writing the configuration in the molecule.yml file inside the scenario directory and in the .config/molecule/config.yml file at the root of the project.

Neither allowed to preserve the files and directories.

Reproducing example

No response