task.json

{
    "inputs": {
        "falcon_asm_done": "/full/path/to/2-asm-falcon/falcon_asm_done"
    },
    "outputs": {
        "ctg_list_file": "ctg_list",
        "job_done": "track_reads_done"
    },
    "parameters": {
        "config": {
            "job_queue": "default",
            "job_type": "local",
            "pwatcher_type": "fs_based",
            "sge_blasr_aln": "-N 1 -c 2 -t 250:00:00 --mem=10G",
            "sge_hasm": "-N 1 -c 2 -t 250:00:00 --mem=10G",
            "sge_phasing": "-N 1 -c 2 -t 250:00:00 --mem=10G",
            "sge_track_reads": "-N 1 -c 2 -t 250:00:00 --mem=10G",
            "smrt_bin": "/path/to/falcon-verXX/bin",
            "unzip_blasr_concurrent_jobs": 8,
            "unzip_phasing_concurrent_jobs": 8
        },
        "sge_option": "-N 1 -c 2 -t 250:00:00 --mem=10G",
        "wd": "/full/path/to/3-unzip/reads"
    },
    "python_function": "falcon_unzip.unzip.task_track_reads"
}