diff --git a/README.md b/README.md
index bfe285c..feda55d 100644
--- a/README.md
+++ b/README.md
@@ -60,7 +60,7 @@ To only run the isONform algorithm:
isONform_parallel --fastq_folder path/to/input/files --t --outfolder /path/to/outfolder --split_wrt_batches
```
-Note: Please always give absolute paths to the files or folders
+Note: Please always use absolute paths to the files or folders
The full isON-pipeline (isONclust, isONcorrect, isONform) can be found [here](https://github.com/aljpetri/isONform/blob/master/isON_pipeline.sh) and is run via:
@@ -69,6 +69,11 @@ The full isON-pipeline (isONclust, isONcorrect, isONform) can be found [here](ht
```
(Please note that this requires isONclust [LINK](https://github.com/ksahlin/isONclust) and isONcorrect [LINK](https://github.com/ksahlin/isONcorrect) to be installed in addition to isONform)
+To receive more information about the arguments used for the isON_pipeline script:
+```
+./isON_pipeline.sh --help
+```
+
## Outputs
IsONform outputs three main files: transcriptome.fasta, mapping.txt, and support.txt.
For each isoform that isONform reconstructs the id has the following form: x_y_z.