Error in if ((crosscorr$rel.phantom.coeff >= 0) argument is of length zero

[GoogleCodeExporter]

What steps will reproduce the problem?
1.I run the program 
2.It loads the files for the peak calling 
3.Outputs the error

What is the expected output? What do you see instead?

I should get the result files.
I get this message:
"Error in if ((crosscorr$rel.phantom.coeff >= 0) & (crosscorr$rel.phantom.coeff 
<  :
  argument is of length zero
Execution halted"

What version of the product are you using? On what operating system?
# run_spp.R
# =============
# Author: Anshul Kundaje, Computer Science Dept., MIT
# Email: anshul@kundaje.net
# Last updated: Feb 12, 2012

Please provide any additional information below.

Original issue reported on code.google.com by jolu...@gmail.com on 27 Feb 2013 at 4:22

[hejing3283]

I still ran into this problem even using the run_spp_nodups.R script.