Welcome to DE_RNA-Seq_nf - a bioinformatics best-practice analysis pipeline for up-stream processing of RNA-Seq data with the main focus on differential expression analysis.
nextflow run ajandria/futuriandge -r main -latest -profile cluster,conda,test --organism mouse --outDir .
nextflow run ajandria/futuriandge -r main -latest -profile cluster,singularity --organism mouse/human --outDir . --input samplesheet.csv
Currently the pipeline supports only the MUB infrastructure (hardcoded references).