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no signal scaffold block #1035

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plant-assembler12 opened this issue Jan 13, 2025 · 0 comments
Open

no signal scaffold block #1035

plant-assembler12 opened this issue Jan 13, 2025 · 0 comments

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@plant-assembler12
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Hello,

First of all, thank you for creating such an excellent program.

I am currently assembling a diploid genome and have noticed that a specific chromosome begins with a white region lacking Hi-C signals.
image

When zooming in on this region, it appears as shown below.
image
image

Should I move this region to the "debris"? Although I have edited various plant genomes using Juicebox, this is the first time I have encountered such a case, so I wanted to ask for your advice.

Thank you for taking the time to read this.

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