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--profile flag in preproc interferes with --profile when running using kslurm #9

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ataha24 opened this issue Dec 18, 2024 · 1 comment
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--profile flag in preproc interferes with --profile when running using kslurm #9

ataha24 opened this issue Dec 18, 2024 · 1 comment
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@mackenziesnyder

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@ataha24
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ataha24 commented Dec 18, 2024

When running on a cluster using kslurm, the --profile as part of the workflow basically does not enable the user to make use of kslurm's or snakemake's --profile option. A good fix could be to simply change --profile to something like --procprofile.
@mackenziesnyder mackenziesnyder self-assigned this Jan 27, 2025
@mackenziesnyder mackenziesnyder mentioned this issue Feb 24, 2025
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@Dhananjhay
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Resolved!

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@ataha24 @Dhananjhay @mackenziesnyder