Installation issues on AWS EC2 #541
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Hi Kalpana, I had the same issue and tried to clone the old repo (previous issue on installation problem). Do you manage to install the previous version as they answered to me? It seems that is no longer available? |
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Hi Angelica, |
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Hi,
I'm trying to install scenic+ on AWS EC2 (ubuntu 22.04). I followed the guidelines here https://scenicplus.readthedocs.io/en/latest/install.html and it installed the python v 3.11.11 and i got the error
ERROR: Package 'scenicplus' requires a different Python: 3.11.11 not in '<=3.11.8,>=3.8'Then i reinstalled python 3.10.16 and then started to get issues with version issues with some packages. I fixed some issues but couldn't find a way around this snakemake version issues.
(scenicplus) ubuntu@ip-172-31-45-96:~/scenicplus$ pip install . Processing /home/ubuntu/scenicplus Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting loomxpy@ git+https://github.com/aertslab/LoomXpy@main (from scenicplus==1.0a2) Cloning https://github.com/aertslab/LoomXpy (to revision main) to /tmp/pip-install-0guq3j2z/loomxpy_2684ce8e12364dd781f026e16d38010f Running command git clone --filter=blob:none --quiet https://github.com/aertslab/LoomXpy /tmp/pip-install-0guq3j2z/loomxpy_2684ce8e12364dd781f026e16d38010f Resolved https://github.com/aertslab/LoomXpy to commit 61995ff10940968eac2cee8fe48300ab477a15d0 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting pycistarget@ git+https://github.com/aertslab/pycistarget (from scenicplus==1.0a2) Cloning https://github.com/aertslab/pycistarget to /tmp/pip-install-0guq3j2z/pycistarget_a2cc627475814fe8bc74689cb210959d Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pycistarget /tmp/pip-install-0guq3j2z/pycistarget_a2cc627475814fe8bc74689cb210959d Resolved https://github.com/aertslab/pycistarget to commit 03e886e9c94bac6a8fd56dde5588ad9824ad4611 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting pycistopic@ git+https://github.com/aertslab/pycisTopic (from scenicplus==1.0a2) Cloning https://github.com/aertslab/pycisTopic to /tmp/pip-install-0guq3j2z/pycistopic_5e3cfeac34da44e093213043629c134e Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pycisTopic /tmp/pip-install-0guq3j2z/pycistopic_5e3cfeac34da44e093213043629c134e Resolved https://github.com/aertslab/pycisTopic to commit 787ce422a37f5975b0ebb9e7b19eeaed44847501 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting pyscenic@ git+https://github.com/aertslab/pySCENIC@master (from scenicplus==1.0a2) Cloning https://github.com/aertslab/pySCENIC (to revision master) to /tmp/pip-install-0guq3j2z/pyscenic_5d6633991c7344b1bddbd5627f459406 Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pySCENIC /tmp/pip-install-0guq3j2z/pyscenic_5d6633991c7344b1bddbd5627f459406 Resolved https://github.com/aertslab/pySCENIC to commit d2309fed83759a0e66e0a995ef3d2f40bf4d6c1a Preparing metadata (setup.py) ... done Collecting adjusttext==1.0.4 (from scenicplus==1.0a2) Using cached adjustText-1.0.4-py3-none-any.whl.metadata (3.0 kB) Collecting aiohttp==3.9.3 (from scenicplus==1.0a2) Using cached aiohttp-3.9.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.4 kB) Collecting aiosignal==1.3.1 (from scenicplus==1.0a2) Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB) Collecting anndata==0.10.5.post1 (from scenicplus==1.0a2) Using cached anndata-0.10.5.post1-py3-none-any.whl.metadata (6.5 kB) Collecting annoy==1.17.3 (from scenicplus==1.0a2) Using cached annoy-1.17.3.tar.gz (647 kB) Preparing metadata (setup.py) ... done Requirement already satisfied: appdirs==1.4.4 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (1.4.4) Collecting arboreto==0.1.6 (from scenicplus==1.0a2) Using cached arboreto-0.1.6-py2.py3-none-any.whl.metadata (5.4 kB) Collecting argparse-dataclass==2.0.0 (from scenicplus==1.0a2) Using cached argparse_dataclass-2.0.0-py3-none-any.whl.metadata (7.2 kB) Collecting array-api-compat==1.5.1 (from scenicplus==1.0a2) Using cached array_api_compat-1.5.1-py3-none-any.whl.metadata (1.3 kB) Collecting asttokens==2.4.1 (from scenicplus==1.0a2) Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB) Collecting attr==0.3.2 (from scenicplus==1.0a2) Using cached attr-0.3.2-py2.py3-none-any.whl.metadata (1.2 kB) Collecting attrs==23.2.0 (from scenicplus==1.0a2) Using cached attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB) Collecting bbknn==1.6.0 (from scenicplus==1.0a2) Using cached bbknn-1.6.0-py3-none-any.whl.metadata (8.2 kB) Collecting beautifulsoup4==4.12.3 (from scenicplus==1.0a2) Using cached beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB) Collecting bidict==0.23.1 (from scenicplus==1.0a2) Using cached bidict-0.23.1-py3-none-any.whl.metadata (8.7 kB) Collecting bioservices==1.11.2 (from scenicplus==1.0a2) Using cached bioservices-1.11.2.tar.gz (191 kB) Preparing metadata (setup.py) ... done Collecting blosc2==2.5.1 (from scenicplus==1.0a2) Using cached blosc2-2.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) Collecting bokeh==3.4.0 (from scenicplus==1.0a2) Using cached bokeh-3.4.0-py3-none-any.whl.metadata (12 kB) Collecting boltons==23.1.1 (from scenicplus==1.0a2) Using cached boltons-23.1.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting bs4==0.0.2 (from scenicplus==1.0a2) Using cached bs4-0.0.2-py2.py3-none-any.whl.metadata (411 bytes) Collecting cattrs==23.2.3 (from scenicplus==1.0a2) Using cached cattrs-23.2.3-py3-none-any.whl.metadata (10 kB) Collecting certifi==2024.2.2 (from scenicplus==1.0a2) Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Collecting charset-normalizer==3.3.2 (from scenicplus==1.0a2) Using cached charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting click==8.1.7 (from scenicplus==1.0a2) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting cloudpickle==3.0.0 (from scenicplus==1.0a2) Using cached cloudpickle-3.0.0-py3-none-any.whl.metadata (7.0 kB) Requirement already satisfied: colorama==0.4.6 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (0.4.6) Collecting colorlog==6.8.2 (from scenicplus==1.0a2) Using cached colorlog-6.8.2-py3-none-any.whl.metadata (10 kB) Collecting conda-inject==1.3.1 (from scenicplus==1.0a2) Using cached conda_inject-1.3.1-py3-none-any.whl.metadata (855 bytes) Requirement already satisfied: configargparse==1.7 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (1.7) Requirement already satisfied: connection-pool==0.0.3 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (0.0.3) Collecting contourpy==1.2.0 (from scenicplus==1.0a2) Using cached contourpy-1.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting ctxcore==0.2.0 (from scenicplus==1.0a2) Using cached ctxcore-0.2.0-py3-none-any.whl.metadata (3.1 kB) Collecting cycler==0.12.1 (from scenicplus==1.0a2) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting cython==0.29.37 (from scenicplus==1.0a2) Using cached Cython-0.29.37-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (3.1 kB) Collecting cytoolz==0.12.3 (from scenicplus==1.0a2) Using cached cytoolz-0.12.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB) Collecting dask==2024.2.1 (from dask[array,complete,dataframe,diagnostics,distributed]==2024.2.1->scenicplus==1.0a2) Using cached dask-2024.2.1-py3-none-any.whl.metadata (3.7 kB) Collecting dataclasses-json==0.6.4 (from scenicplus==1.0a2) Using cached dataclasses_json-0.6.4-py3-none-any.whl.metadata (25 kB) Requirement already satisfied: datrie==0.8.2 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (0.8.2) Collecting decorator==5.1.1 (from scenicplus==1.0a2) Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB) Collecting dill==0.3.8 (from scenicplus==1.0a2) Using cached dill-0.3.8-py3-none-any.whl.metadata (10 kB) Collecting distributed==2024.2.1 (from scenicplus==1.0a2) Using cached distributed-2024.2.1-py3-none-any.whl.metadata (3.4 kB) Collecting docutils==0.20.1 (from scenicplus==1.0a2) Using cached docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) Collecting dpath==2.1.6 (from scenicplus==1.0a2) Using cached dpath-2.1.6-py3-none-any.whl.metadata (15 kB) Collecting easydev==0.13.1 (from scenicplus==1.0a2) Using cached easydev-0.13.1-py3-none-any.whl.metadata (3.5 kB) Collecting et-xmlfile==1.1.0 (from scenicplus==1.0a2) Using cached et_xmlfile-1.1.0-py3-none-any.whl.metadata (1.8 kB) Collecting executing==2.0.1 (from scenicplus==1.0a2) Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB) Collecting fastjsonschema==2.19.1 (from scenicplus==1.0a2) Using cached fastjsonschema-2.19.1-py3-none-any.whl.metadata (2.1 kB) Collecting fbpca==1.0 (from scenicplus==1.0a2) Using cached fbpca-1.0.tar.gz (11 kB) Preparing metadata (setup.py) ... done Collecting filelock==3.13.1 (from scenicplus==1.0a2) Using cached filelock-3.13.1-py3-none-any.whl.metadata (2.8 kB) Collecting fonttools==4.50.0 (from scenicplus==1.0a2) Using cached fonttools-4.50.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (159 kB) Collecting frozendict==2.4.0 (from scenicplus==1.0a2) Using cached frozendict-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (23 kB) Collecting frozenlist==1.4.1 (from scenicplus==1.0a2) Using cached frozenlist-1.4.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB) Collecting fsspec==2024.3.1 (from scenicplus==1.0a2) Using cached fsspec-2024.3.1-py3-none-any.whl.metadata (6.8 kB) Collecting future==1.0.0 (from scenicplus==1.0a2) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting gensim==4.3.2 (from scenicplus==1.0a2) Using cached gensim-4.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) Collecting geosketch==1.2 (from scenicplus==1.0a2) Using cached geosketch-1.2-py3-none-any.whl.metadata (406 bytes) Collecting gevent==24.2.1 (from scenicplus==1.0a2) Using cached gevent-24.2.1-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (13 kB) Collecting gitdb==4.0.11 (from scenicplus==1.0a2) Using cached gitdb-4.0.11-py3-none-any.whl.metadata (1.2 kB) Collecting gitpython==3.1.42 (from scenicplus==1.0a2) Using cached GitPython-3.1.42-py3-none-any.whl.metadata (12 kB) Collecting globre==0.1.5 (from scenicplus==1.0a2) Using cached globre-0.1.5.tar.gz (20 kB) Preparing metadata (setup.py) ... done Collecting greenlet==3.0.3 (from scenicplus==1.0a2) Using cached greenlet-3.0.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.8 kB) Collecting grequests==0.7.0 (from scenicplus==1.0a2) Using cached grequests-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB) Collecting gseapy==0.10.8 (from scenicplus==1.0a2) Using cached gseapy-0.10.8-py3-none-any.whl.metadata (11 kB) Collecting h5py==3.10.0 (from scenicplus==1.0a2) Using cached h5py-3.10.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting harmonypy==0.0.9 (from scenicplus==1.0a2) Using cached harmonypy-0.0.9-py3-none-any.whl.metadata (3.7 kB) Requirement already satisfied: humanfriendly==10.0 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (10.0) Collecting idna==3.6 (from scenicplus==1.0a2) Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) Collecting igraph==0.11.4 (from scenicplus==1.0a2) Using cached igraph-0.11.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB) Collecting imageio==2.34.0 (from scenicplus==1.0a2) Using cached imageio-2.34.0-py3-none-any.whl.metadata (4.9 kB) Collecting immutables==0.20 (from scenicplus==1.0a2) Using cached immutables-0.20-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB) Collecting importlib-metadata==7.0.1 (from scenicplus==1.0a2) Using cached importlib_metadata-7.0.1-py3-none-any.whl.metadata (4.9 kB) Collecting importlib-resources==6.1.2 (from scenicplus==1.0a2) Using cached importlib_resources-6.1.2-py3-none-any.whl.metadata (3.9 kB) Collecting interlap==0.2.7 (from scenicplus==1.0a2) Using cached interlap-0.2.7.tar.gz (6.1 kB) Preparing metadata (setup.py) ... done Collecting intervaltree==3.1.0 (from scenicplus==1.0a2) Using cached intervaltree-3.1.0.tar.gz (32 kB) Preparing metadata (setup.py) ... done Collecting ipython==8.22.2 (from scenicplus==1.0a2) Using cached ipython-8.22.2-py3-none-any.whl.metadata (4.8 kB) Collecting jedi==0.19.1 (from scenicplus==1.0a2) Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB) Collecting jinja2==3.1.3 (from scenicplus==1.0a2) Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) Collecting joblib==1.3.2 (from scenicplus==1.0a2) Using cached joblib-1.3.2-py3-none-any.whl.metadata (5.4 kB) Collecting jsonpickle==3.0.3 (from scenicplus==1.0a2) Using cached jsonpickle-3.0.3-py3-none-any.whl.metadata (7.3 kB) Collecting jsonschema==4.21.1 (from scenicplus==1.0a2) Using cached jsonschema-4.21.1-py3-none-any.whl.metadata (7.8 kB) Collecting jsonschema-specifications==2023.12.1 (from scenicplus==1.0a2) Using cached jsonschema_specifications-2023.12.1-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: jupyter-core==5.7.2 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (5.7.2) Collecting kaleido==0.2.1 (from scenicplus==1.0a2) Using cached kaleido-0.2.1-py2.py3-none-manylinux1_x86_64.whl.metadata (15 kB) Collecting kiwisolver==1.4.5 (from scenicplus==1.0a2) Using cached kiwisolver-1.4.5-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.4 kB) Collecting lazy-loader==0.3 (from scenicplus==1.0a2) Using cached lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB) Collecting lda==3.0.0 (from scenicplus==1.0a2) Using cached lda-3.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) Collecting leidenalg==0.10.2 (from scenicplus==1.0a2) Using cached leidenalg-0.10.2-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (10 kB) Collecting line-profiler==4.1.2 (from scenicplus==1.0a2) Using cached line_profiler-4.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) Collecting llvmlite==0.42.0 (from scenicplus==1.0a2) Using cached llvmlite-0.42.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.8 kB) Collecting locket==1.0.0 (from scenicplus==1.0a2) Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Collecting loompy==3.0.7 (from scenicplus==1.0a2) Using cached loompy-3.0.7.tar.gz (4.8 MB) Preparing metadata (setup.py) ... done Collecting lxml==5.1.0 (from scenicplus==1.0a2) Using cached lxml-5.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.5 kB) Collecting lz4==4.3.3 (from scenicplus==1.0a2) Using cached lz4-4.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.7 kB) Collecting macs2==2.2.9.1 (from scenicplus==1.0a2) Using cached MACS2-2.2.9.1.tar.gz (2.0 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: markdown-it-py==3.0.0 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (3.0.0) Collecting markupsafe==2.1.5 (from scenicplus==1.0a2) Using cached MarkupSafe-2.1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting marshmallow==3.21.1 (from scenicplus==1.0a2) Using cached marshmallow-3.21.1-py3-none-any.whl.metadata (7.2 kB) Collecting matplotlib==3.6.3 (from scenicplus==1.0a2) Using cached matplotlib-3.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.8 kB) Collecting matplotlib-inline==0.1.6 (from scenicplus==1.0a2) Using cached matplotlib_inline-0.1.6-py3-none-any.whl.metadata (2.8 kB) Requirement already satisfied: mdurl==0.1.2 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (0.1.2) Collecting mizani==0.9.3 (from scenicplus==1.0a2) Using cached mizani-0.9.3-py3-none-any.whl.metadata (4.6 kB) Collecting msgpack==1.0.8 (from scenicplus==1.0a2) Using cached msgpack-1.0.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) Collecting mudata==0.2.3 (from scenicplus==1.0a2) Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB) Collecting multidict==6.0.5 (from scenicplus==1.0a2) Using cached multidict-6.0.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB) Collecting multiprocessing-on-dill==3.5.0a4 (from scenicplus==1.0a2) Using cached multiprocessing_on_dill-3.5.0a4.tar.gz (53 kB) Preparing metadata (setup.py) ... done Collecting mypy-extensions==1.0.0 (from scenicplus==1.0a2) Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB) Collecting natsort==8.4.0 (from scenicplus==1.0a2) Using cached natsort-8.4.0-py3-none-any.whl.metadata (21 kB) Collecting nbformat==5.10.3 (from scenicplus==1.0a2) Using cached nbformat-5.10.3-py3-none-any.whl.metadata (3.6 kB) Collecting ncls==0.0.68 (from scenicplus==1.0a2) Using cached ncls-0.0.68-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB) Collecting ndindex==1.8 (from scenicplus==1.0a2) Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) Collecting networkx==3.2.1 (from scenicplus==1.0a2) Using cached networkx-3.2.1-py3-none-any.whl.metadata (5.2 kB) Collecting numba==0.59.0 (from scenicplus==1.0a2) Using cached numba-0.59.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.7 kB) Collecting numexpr==2.9.0 (from scenicplus==1.0a2) Using cached numexpr-2.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) Collecting numpy==1.26.4 (from scenicplus==1.0a2) Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting numpy-groupies==0.10.2 (from scenicplus==1.0a2) Using cached numpy_groupies-0.10.2-py3-none-any.whl.metadata (18 kB) Collecting openpyxl==3.1.2 (from scenicplus==1.0a2) Using cached openpyxl-3.1.2-py2.py3-none-any.whl.metadata (2.5 kB) Collecting packaging==24.0 (from scenicplus==1.0a2) Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) Collecting pandas==1.5.0 (from scenicplus==1.0a2) Using cached pandas-1.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting parso==0.8.3 (from scenicplus==1.0a2) Using cached parso-0.8.3-py2.py3-none-any.whl.metadata (7.5 kB) Collecting partd==1.4.1 (from scenicplus==1.0a2) Using cached partd-1.4.1-py3-none-any.whl.metadata (4.6 kB) Collecting patsy==0.5.6 (from scenicplus==1.0a2) Using cached patsy-0.5.6-py2.py3-none-any.whl.metadata (3.5 kB) Collecting pexpect==4.9.0 (from scenicplus==1.0a2) Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB) Collecting pillow==10.2.0 (from scenicplus==1.0a2) Using cached pillow-10.2.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.7 kB) Requirement already satisfied: plac==1.4.3 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (1.4.3) Collecting platformdirs==4.2.0 (from scenicplus==1.0a2) Using cached platformdirs-4.2.0-py3-none-any.whl.metadata (11 kB) Collecting plotly==5.19.0 (from scenicplus==1.0a2) Using cached plotly-5.19.0-py3-none-any.whl.metadata (7.0 kB) Collecting plotnine==0.12.4 (from scenicplus==1.0a2) Using cached plotnine-0.12.4-py3-none-any.whl.metadata (8.9 kB) Collecting polars==0.20.13 (from scenicplus==1.0a2) Using cached polars-0.20.13-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (15 kB) Collecting progressbar2==4.4.2 (from scenicplus==1.0a2) Using cached progressbar2-4.4.2-py3-none-any.whl.metadata (17 kB) Collecting prompt-toolkit==3.0.43 (from scenicplus==1.0a2) Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB) Collecting protobuf==5.26.0 (from scenicplus==1.0a2) Using cached protobuf-5.26.0-cp37-abi3-manylinux2014_x86_64.whl.metadata (592 bytes) Collecting psutil==5.9.8 (from scenicplus==1.0a2) Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) Collecting ptyprocess==0.7.0 (from scenicplus==1.0a2) Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB) Collecting pulp==2.8.0 (from scenicplus==1.0a2) Using cached PuLP-2.8.0-py3-none-any.whl.metadata (5.4 kB) Collecting pure-eval==0.2.2 (from scenicplus==1.0a2) Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB) Collecting py-cpuinfo==9.0.0 (from scenicplus==1.0a2) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting pyarrow==15.0.0 (from scenicplus==1.0a2) Using cached pyarrow-15.0.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.0 kB) Collecting pyarrow-hotfix==0.6 (from scenicplus==1.0a2) Using cached pyarrow_hotfix-0.6-py3-none-any.whl.metadata (3.6 kB) Collecting pybedtools==0.9.1 (from scenicplus==1.0a2) Using cached pybedtools-0.9.1.tar.gz (12.5 MB) Preparing metadata (setup.py) ... done Collecting pybigtools==0.1.2 (from scenicplus==1.0a2) Using cached pybigtools-0.1.2-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (1.2 kB) Collecting pybigwig==0.3.22 (from scenicplus==1.0a2) Using cached pyBigWig-0.3.22-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) Collecting pybiomart==0.2.0 (from scenicplus==1.0a2) Using cached pybiomart-0.2.0-py3-none-any.whl.metadata (1.1 kB) Collecting pyfasta==0.5.2 (from scenicplus==1.0a2) Using cached pyfasta-0.5.2.tar.gz (19 kB) Preparing metadata (setup.py) ... done Collecting pygam==0.9.0 (from scenicplus==1.0a2) Using cached pygam-0.9.0-py3-none-any.whl.metadata (7.0 kB) Collecting pygments==2.17.2 (from scenicplus==1.0a2) Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) Collecting pynndescent==0.5.11 (from scenicplus==1.0a2) Using cached pynndescent-0.5.11-py3-none-any.whl.metadata (6.8 kB) Collecting pyparsing==3.1.2 (from scenicplus==1.0a2) Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) Collecting pyranges==0.0.111 (from scenicplus==1.0a2) Using cached pyranges-0.0.111.tar.gz (681 kB) Preparing metadata (setup.py) ... done Collecting pyrle==0.0.39 (from scenicplus==1.0a2) Using cached pyrle-0.0.39.tar.gz (461 kB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting pysam==0.22.0 (from scenicplus==1.0a2) Using cached pysam-0.22.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (1.5 kB) Requirement already satisfied: python-dateutil==2.9.0.post0 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (2.9.0.post0) Collecting python-utils==3.8.2 (from scenicplus==1.0a2) Using cached python_utils-3.8.2-py2.py3-none-any.whl.metadata (9.7 kB) Requirement already satisfied: pytz==2024.1 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (2024.1) Collecting pyvis==0.3.2 (from scenicplus==1.0a2) Using cached pyvis-0.3.2-py3-none-any.whl.metadata (1.7 kB) Collecting pyyaml==6.0.1 (from scenicplus==1.0a2) Using cached PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting ray==2.9.3 (from scenicplus==1.0a2) Using cached ray-2.9.3-cp310-cp310-manylinux2014_x86_64.whl.metadata (13 kB) Collecting referencing==0.34.0 (from scenicplus==1.0a2) Using cached referencing-0.34.0-py3-none-any.whl.metadata (2.8 kB) Collecting requests==2.31.0 (from scenicplus==1.0a2) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting requests-cache==1.2.0 (from scenicplus==1.0a2) Using cached requests_cache-1.2.0-py3-none-any.whl.metadata (9.9 kB) Requirement already satisfied: reretry==0.11.8 in /home/ubuntu/anaconda3/envs/scenicplus/lib/python3.10/site-packages (from scenicplus==1.0a2) (0.11.8) Collecting rich==13.7.1 (from scenicplus==1.0a2) Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB) Collecting rich-argparse==1.4.0 (from scenicplus==1.0a2) Using cached rich_argparse-1.4.0-py3-none-any.whl.metadata (14 kB) Collecting rpds-py==0.18.0 (from scenicplus==1.0a2) Using cached rpds_py-0.18.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) Collecting scanorama==1.7.4 (from scenicplus==1.0a2) Using cached scanorama-1.7.4-py3-none-any.whl.metadata (525 bytes) Collecting scanpy==1.8.2 (from scenicplus==1.0a2) Using cached scanpy-1.8.2-py3-none-any.whl.metadata (5.8 kB) Collecting scatac-fragment-tools==0.1.0 (from scenicplus==1.0a2) Using cached scatac_fragment_tools-0.1.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.6 kB) Collecting scikit-image==0.22.0 (from scenicplus==1.0a2) Using cached scikit_image-0.22.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB) Collecting scikit-learn==1.3.2 (from scenicplus==1.0a2) Using cached scikit_learn-1.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting scipy==1.12.0 (from scenicplus==1.0a2) Using cached scipy-1.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Collecting scrublet==0.2.3 (from scenicplus==1.0a2) Using cached scrublet-0.2.3-py3-none-any.whl.metadata (3.1 kB) Collecting seaborn==0.13.2 (from scenicplus==1.0a2) Using cached seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting sinfo==0.3.4 (from scenicplus==1.0a2) Using cached sinfo-0.3.4.tar.gz (24 kB) Preparing metadata (setup.py) ... done Collecting six==1.16.0 (from scenicplus==1.0a2) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting smart-open==6.4.0 (from scenicplus==1.0a2) Using cached smart_open-6.4.0-py3-none-any.whl.metadata (21 kB) Collecting smmap==5.0.1 (from scenicplus==1.0a2) Using cached smmap-5.0.1-py3-none-any.whl.metadata (4.3 kB) INFO: pip is looking at multiple versions of scenicplus to determine which version is compatible with other requirements. This could take a while. ERROR: Could not find a version that satisfies the requirement snakemake==8.5.5 (from scenicplus) (from versions: 1.0, 1.0.1, 1.0.2, 1.1, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.2, 1.2.1, 1.2.3, 2.0, 2.1, 2.1.1, 2.2, 2.2.1, 2.2.2, 2.3, 2.4, 2.4.1, 2.4.2, 2.4.3, 2.4.4, 2.4.5, 2.4.6, 2.4.7, 2.4.7.1, 2.4.8, 2.4.9, 2.5, 2.5.1, 2.5.2, 2.5.2.1, 2.5.2.2, 3.0b1, 3.0, 3.1, 3.1.1, 3.2, 3.2.1, 3.2.2, 3.3, 3.4, 3.4.1, 3.4.2, 3.5.0, 3.5.1, 3.5.2, 3.5.3, 3.5.4, 3.5.5, 3.6.0, 3.6.1, 3.7.0, 3.7.1, 3.8.0, 3.8.1, 3.8.2, 3.9.0, 3.9.1, 3.10.0, 3.10.1, 3.10.2, 3.11.0, 3.11.1, 3.11.2, 3.12.0, 3.13.0, 3.13.1, 3.13.2, 3.13.3, 4.0.0, 4.1.0, 4.2.0, 4.3.0, 4.3.1, 4.4.0, 4.5.0, 4.5.1, 4.6.0, 4.7.0, 4.8.0, 4.8.1, 5.0.0, 5.1.1, 5.1.2, 5.1.3, 5.1.4, 5.1.5, 5.2.0, 5.2.1, 5.2.2, 5.2.3, 5.2.4, 5.3.0, 5.3.1, 5.4.0, 5.4.1, 5.4.2, 5.4.3, 5.4.4, 5.4.5, 5.5.0, 5.5.1, 5.5.2, 5.5.3, 5.5.4, 5.6.0, 5.7.0, 5.7.1, 5.7.4, 5.8.0, 5.8.1, 5.8.2, 5.9.0, 5.9.1, 5.10.0, 5.11.0, 5.11.1, 5.11.2, 5.12.0, 5.12.1, 5.12.2, 5.12.3, 5.13.0, 5.14.0, 5.15.0, 5.16.0, 5.17.0, 5.18.0, 5.18.1, 5.19.0, 5.19.1, 5.19.2, 5.19.3, 5.20.0, 5.20.1, 5.21.0, 5.22.0, 5.22.1, 5.23.0, 5.24.0, 5.24.1, 5.24.2, 5.25.0, 5.26.0, 5.26.1, 5.27.2, 5.27.3, 5.27.4, 5.28.0, 5.29.0, 5.30.0, 5.30.1, 5.30.2, 5.31.0, 5.31.1, 5.32.0, 5.32.1, 5.32.2, 6.0.0, 6.0.1, 6.0.2, 6.0.3, 6.0.4, 6.0.5, 6.1.0, 6.1.1, 6.1.2, 6.2.0, 6.2.1, 6.3.0, 6.4.0, 6.4.1, 6.5.0, 6.5.1, 6.5.2, 6.5.3, 6.5.5, 6.6.0, 6.6.1, 6.7.0, 6.8.0, 6.8.1, 6.8.2, 6.9.0, 6.9.1, 6.10.0, 6.11.0, 6.11.1, 6.12.0, 6.12.1, 6.12.2, 6.12.3, 6.13.0, 6.13.1, 6.14.0, 6.15.0, 6.15.1, 6.15.2, 6.15.3, 6.15.4, 6.15.5, 7.0.0, 7.0.1, 7.0.2, 7.0.3, 7.0.4, 7.1.0, 7.1.1, 7.2.0, 7.2.1, 7.3.0, 7.3.1, 7.3.2, 7.3.3, 7.3.4, 7.3.5, 7.3.6, 7.3.7, 7.3.8, 7.4.0, 7.5.0, 7.6.0, 7.6.1, 7.6.2, 7.7.0, 7.8.0, 7.8.1, 7.8.2, 7.8.3, 7.8.5, 7.9.0, 7.10.0, 7.11.0, 7.12.0, 7.12.1, 7.13.0, 7.14.0, 7.14.1, 7.14.2, 7.15.0, 7.15.1, 7.15.2, 7.16.0, 7.16.1, 7.16.2, 7.17.0, 7.17.1, 7.18.0, 7.18.1, 7.18.2, 7.19.0, 7.19.1, 7.20.0, 7.21.0, 7.22.0, 7.23.0, 7.23.1, 7.24.0, 7.24.1, 7.24.2, 7.25.0, 7.25.1, 7.25.2, 7.25.3, 7.25.4, 7.26.0, 7.28.0, 7.28.1, 7.28.2, 7.28.3, 7.29.0, 7.30.0, 7.30.1, 7.30.2, 7.31.0, 7.31.1, 7.32.0, 7.32.1, 7.32.2, 7.32.3, 7.32.4) ERROR: No matching distribution found for snakemake==8.5.5Can you please help me with this.
Thank you,
Kalpana
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