DESCRIPTION

Package: bcbioSingleCell
Title: Bcbio Single-Cell RNA-Seq
Description: R package for bcbio single-cell RNA-seq analysis.
Version: 0.7.1
Date: 2023-12-04
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Rory",
        family = "Kirchner",
        email = "roryk@alum.mit.edu",
        role = "aut",
        comment = c(ORCID = "0000-0003-4814-5885")
    ),
    person(
        given = "Mary",
        family = "Piper",
        email = "mary.piper@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0003-2699-3840")
    ),
    person(
        given = "Victor",
        family = "Barrera",
        email = "barrera.vic@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0003-0590-4634")
    ),
    person(
        given = "Shannan",
        family = "Ho Sui",
        email = "shosui@hsph.harvard.edu",
        role = "aut",
        comment = c(ORCID = "0000-0002-6191-4709")
    ),
    person(
        given = "Harvard Chan Bioinformatics Core",
        email = "bioinformatics@hsph.harvard.edu",
        role = c("cph", "fnd")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL:
    https://r.acidgenomics.com/packages/bcbiosinglecell/,
    https://github.com/hbc/bcbioSingleCell/
BugReports: https://github.com/hbc/bcbioSingleCell/issues/
License: AGPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.3)
Imports:
    AcidBase (>= 0.7.0),
    AcidCLI (>= 0.3.0),
    AcidExperiment (>= 0.5.0),
    AcidGenerics (>= 0.7.1),
    AcidGenomes (>= 0.6.0),
    AcidMarkdown (>= 0.3.0),
    AcidPlots (>= 0.7.0),
    AcidPlyr (>= 0.5.0),
    AcidSingleCell (>= 0.4.0),
    BiocGenerics (>= 0.46.0),
    IRanges (>= 2.34.0),
    S4Vectors (>= 0.38.0),
    SingleCellExperiment (>= 1.22.0),
    SummarizedExperiment (>= 1.30.0),
    bcbioBase (>= 0.9.0),
    ggplot2 (>= 3.4.3),
    ggridges (>= 0.5.4),
    goalie (>= 0.7.1),
    pipette (>= 0.14.0),
    syntactic (>= 0.7.0),
    methods,
    parallel,
    utils
Suggests:
    AcidDevTools (>= 0.7.1),
    Biostrings (>= 2.68.0),
    basejump (>= 0.18.0),
    rmarkdown (>= 2.25),
    testthat (>= 3.1.10),
    graphics
Additional_repositories: https://r.acidgenomics.com
Config/testthat/edition: 3
Config/testthat/parallel: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3