Discussions

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  metaSpades can't input two or more files

  siduanmiao asked Nov 13, 2022 in Q&A · Unanswered

  

  

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  Higher coverage - lower contiguity?

  TymekPieszko asked Dec 15, 2022 in Q&A · Unanswered

  

  

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  Spades installation

  DenisGoryunov asked Nov 15, 2022 in Q&A · Answered

  

  

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  Should the results of metaviralspades and metaplasmidspades be used with scaffolds from metaspades for binning?

  jolespin asked Nov 3, 2022 in Q&A · Unanswered

  

  

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  getting too many contigs and as many scaffolds

  aayushirambia asked Nov 4, 2022 in Q&A · Unanswered

  

  

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  finished abnormally, Err code: -15 (running as script did not help)

  swiesenfeld0 asked Sep 9, 2022 in Q&A · Answered

  

  

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  Single-end support for metaspades.py

  skchronicles started Sep 12, 2022 in General

  

  

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  Warnings. None of paired reads aligned properly.

  DanieleDeco asked Sep 5, 2022 in Q&A · Unanswered

  

  

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  HybridSPAdes - different graph outputs

  nettanetta asked Feb 9, 2022 in Q&A · Answered

  

  

  

  

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  Execute ion hammer only

  joowkim asked Aug 18, 2022 in Q&A · Answered

  

  

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  Questions about assembly with merged paired-end reads

  darksky1605 asked May 24, 2021 in Q&A · Answered

  

  

  

  

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  metaplasmidspades --assembly-graph

  INFINITY1993 asked Aug 2, 2022 in Q&A · Answered

  

  

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  == Error == system call for: "['...']" finished abnormally, OS return value: 2

  manual Issues explained in the manual log Errors explained in the log file

  TX0814 asked Jul 28, 2022 in Q&A · Unanswered

  

  

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  Can I see paper about LargeSPAdes?

  ods1108 asked Jul 21, 2022 in Q&A · Unanswered

  

  

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  Version of SPAdes

  chienfuwu asked Jul 16, 2022 in Q&A · Answered

  

  

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  metaplasmidSPAdes reconstructs identical plasmids

  barbaracania asked May 3, 2022 in Q&A · Unanswered

  

  

  

  

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  Output files when MismatchCorrector is enabled

  invalid manual Issues explained in the manual log Errors explained in the log file

  sallesmath asked Jul 14, 2022 in Q&A · Unanswered

  

  

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  Question on the usage of --sc

  Chongli-90 asked Jun 25, 2022 in Q&A · Answered

  

  

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  Metaplasmidspades cli using assembly graph

  pbelmann asked Jun 13, 2022 in Q&A · Answered

  

  

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  Can't submit metaSPAdes_assemble script using ${PBS_ARRAYID} when having the my_data_set.yaml file?

  B-1991-ing asked Jun 4, 2022 in Q&A · Unanswered

  

  

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  Error in spades result

  Noormaho asked Jun 1, 2022 in Q&A · Unanswered

  

  

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  metaSPAdes or metaviralSPAdes for viral contigs assembly?

  ShailNair asked May 29, 2022 in Q&A · Unanswered

  

  

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  Double stranded assembly graph

  ods1108 started May 14, 2022 in General

  

  

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  error correction output

  INFINITY1993 asked Apr 25, 2022 in Q&A · Unanswered

  

  

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  What happens when mimalloc: warning: unable to allocate from region: size 4194304 in log and then continues

  jolespin asked Apr 5, 2022 in Q&A · Unanswered

  

  

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