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It is only you who can decide if the assembly results are usable for the next step of analysis or not. |
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Originally posted by @asl in #460 (comment)
So, when I encounter the following warnings, can I ignore these warnings and proceed with the next step of analysis using the assembly results? Thanks for your help.
=== Error correction and assembling warnings:
1:47:47.483 82G / 113G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 57
1:47:47.494 82G / 113G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 57
2:34:50.652 81G / 112G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 16
2:34:50.659 81G / 112G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 16
3:43:21.155 68G / 97G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable
3:43:39.815 68G / 97G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 8
======= Warnings saved to /home/pmslab/Desktop/Raman/Convallaria_mt/keiskei_hybrid_assembly/warnings.log
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