From 6260eff0894da3e7e056e4e0e846b43cd7176201 Mon Sep 17 00:00:00 2001 From: Alexey Gurevich Date: Wed, 29 Apr 2020 19:03:30 +0300 Subject: [PATCH] Happy New 2020 Year! (32.63% passed already..) --- icarus.py | 2 +- metaquast.py | 2 +- quast.py | 2 +- quast_libs/N50.py | 2 +- quast_libs/aligned_stats.py | 2 +- quast_libs/basic_stats.py | 2 +- quast_libs/ca_utils/align_contigs.py | 2 +- quast_libs/ca_utils/analyze_contigs.py | 2 +- quast_libs/ca_utils/analyze_misassemblies.py | 2 +- quast_libs/ca_utils/best_set_selection.py | 2 +- quast_libs/ca_utils/misc.py | 2 +- quast_libs/ca_utils/save_results.py | 2 +- quast_libs/circos.py | 2 +- quast_libs/contigs_analyzer.py | 2 +- quast_libs/create_meta_summary.py | 2 +- quast_libs/fastaparser.py | 2 +- quast_libs/genemark.py | 2 +- quast_libs/genes_parser.py | 2 +- quast_libs/genome_analyzer.py | 2 +- quast_libs/glimmer.py | 2 +- quast_libs/html_saver/html_saver.py | 2 +- quast_libs/html_saver/json_saver.py | 2 +- quast_libs/icarus.py | 2 +- quast_libs/icarus_builder.py | 2 +- quast_libs/icarus_parser.py | 2 +- quast_libs/icarus_utils.py | 2 +- quast_libs/log.py | 2 +- quast_libs/metautils.py | 2 +- quast_libs/optimal_assembly.py | 2 +- quast_libs/options_parser.py | 2 +- quast_libs/plotter.py | 2 +- quast_libs/plotter_data.py | 2 +- quast_libs/qconfig.py | 2 +- quast_libs/qutils.py | 2 +- quast_libs/ra_utils/misc.py | 2 +- quast_libs/reads_analyzer.py | 2 +- quast_libs/reporting.py | 2 +- quast_libs/run_barrnap.py | 2 +- quast_libs/run_busco.py | 2 +- quast_libs/search_references_meta.py | 2 +- quast_libs/unique_kmers.py | 2 +- setup.py | 2 +- 42 files changed, 42 insertions(+), 42 deletions(-) diff --git a/icarus.py b/icarus.py index 513156dc9a..1240382845 100755 --- a/icarus.py +++ b/icarus.py @@ -1,7 +1,7 @@ #!/usr/bin/env python ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/metaquast.py b/metaquast.py index 5e1fda66a2..faa0cda72c 100755 --- a/metaquast.py +++ b/metaquast.py @@ -1,7 +1,7 @@ #!/usr/bin/env python ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast.py b/quast.py index f3782204a3..a1c33db0b7 100755 --- a/quast.py +++ b/quast.py @@ -1,7 +1,7 @@ #!/usr/bin/env python ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/N50.py b/quast_libs/N50.py index 55287f6a8a..d8874c7b14 100644 --- a/quast_libs/N50.py +++ b/quast_libs/N50.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/aligned_stats.py b/quast_libs/aligned_stats.py index b6282a2acd..73c590e91c 100644 --- a/quast_libs/aligned_stats.py +++ b/quast_libs/aligned_stats.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/basic_stats.py b/quast_libs/basic_stats.py index d7cf89f866..e243d4f70a 100644 --- a/quast_libs/basic_stats.py +++ b/quast_libs/basic_stats.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/align_contigs.py b/quast_libs/ca_utils/align_contigs.py index 6a2e38b122..41c34e2dad 100644 --- a/quast_libs/ca_utils/align_contigs.py +++ b/quast_libs/ca_utils/align_contigs.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/analyze_contigs.py b/quast_libs/ca_utils/analyze_contigs.py index e52e8e617c..147d01d9c1 100644 --- a/quast_libs/ca_utils/analyze_contigs.py +++ b/quast_libs/ca_utils/analyze_contigs.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/analyze_misassemblies.py b/quast_libs/ca_utils/analyze_misassemblies.py index e6632c478b..6cd5f09c38 100644 --- a/quast_libs/ca_utils/analyze_misassemblies.py +++ b/quast_libs/ca_utils/analyze_misassemblies.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/best_set_selection.py b/quast_libs/ca_utils/best_set_selection.py index bfcf0e1dd1..a114ee99cf 100644 --- a/quast_libs/ca_utils/best_set_selection.py +++ b/quast_libs/ca_utils/best_set_selection.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/misc.py b/quast_libs/ca_utils/misc.py index 8cf32d5115..5370cf1dc7 100644 --- a/quast_libs/ca_utils/misc.py +++ b/quast_libs/ca_utils/misc.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ca_utils/save_results.py b/quast_libs/ca_utils/save_results.py index 25eda89951..107e4ba9fb 100644 --- a/quast_libs/ca_utils/save_results.py +++ b/quast_libs/ca_utils/save_results.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/circos.py b/quast_libs/circos.py index 49679d003b..6d7c5e43c4 100644 --- a/quast_libs/circos.py +++ b/quast_libs/circos.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/contigs_analyzer.py b/quast_libs/contigs_analyzer.py index 21bf5628be..fcaa210773 100644 --- a/quast_libs/contigs_analyzer.py +++ b/quast_libs/contigs_analyzer.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/create_meta_summary.py b/quast_libs/create_meta_summary.py index 19bcee440e..15ad5f04f6 100644 --- a/quast_libs/create_meta_summary.py +++ b/quast_libs/create_meta_summary.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/fastaparser.py b/quast_libs/fastaparser.py index fad91c0359..60ff154d44 100644 --- a/quast_libs/fastaparser.py +++ b/quast_libs/fastaparser.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/genemark.py b/quast_libs/genemark.py index 272b22ef77..801691316a 100644 --- a/quast_libs/genemark.py +++ b/quast_libs/genemark.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/genes_parser.py b/quast_libs/genes_parser.py index 025b4a25e2..ae241211c7 100644 --- a/quast_libs/genes_parser.py +++ b/quast_libs/genes_parser.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/genome_analyzer.py b/quast_libs/genome_analyzer.py index cc407dbedd..b5ad29dfeb 100644 --- a/quast_libs/genome_analyzer.py +++ b/quast_libs/genome_analyzer.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/glimmer.py b/quast_libs/glimmer.py index 3c9d2aabd3..96eb3ffc74 100644 --- a/quast_libs/glimmer.py +++ b/quast_libs/glimmer.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/html_saver/html_saver.py b/quast_libs/html_saver/html_saver.py index 8b4f55baaa..6edd5d23b3 100644 --- a/quast_libs/html_saver/html_saver.py +++ b/quast_libs/html_saver/html_saver.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/html_saver/json_saver.py b/quast_libs/html_saver/json_saver.py index 783b49086a..c9def41a68 100644 --- a/quast_libs/html_saver/json_saver.py +++ b/quast_libs/html_saver/json_saver.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/icarus.py b/quast_libs/icarus.py index 38ce5069b0..d8b072d1d0 100644 --- a/quast_libs/icarus.py +++ b/quast_libs/icarus.py @@ -1,7 +1,7 @@ #!/usr/bin/python -O ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/icarus_builder.py b/quast_libs/icarus_builder.py index 2d422083bc..5d67768fde 100644 --- a/quast_libs/icarus_builder.py +++ b/quast_libs/icarus_builder.py @@ -1,7 +1,7 @@ #!/usr/bin/python -O ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/icarus_parser.py b/quast_libs/icarus_parser.py index 03f6d6090f..691b603c65 100644 --- a/quast_libs/icarus_parser.py +++ b/quast_libs/icarus_parser.py @@ -1,7 +1,7 @@ #!/usr/bin/python -O ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/icarus_utils.py b/quast_libs/icarus_utils.py index 360ee807d2..c547252abc 100644 --- a/quast_libs/icarus_utils.py +++ b/quast_libs/icarus_utils.py @@ -1,7 +1,7 @@ #!/usr/bin/python -O ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/log.py b/quast_libs/log.py index 6fd79e77a5..d498d5c850 100644 --- a/quast_libs/log.py +++ b/quast_libs/log.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/metautils.py b/quast_libs/metautils.py index 0d56ce7d80..f3e182b613 100644 --- a/quast_libs/metautils.py +++ b/quast_libs/metautils.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/optimal_assembly.py b/quast_libs/optimal_assembly.py index 9ecf44e8c8..0beeed1869 100644 --- a/quast_libs/optimal_assembly.py +++ b/quast_libs/optimal_assembly.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/options_parser.py b/quast_libs/options_parser.py index d8309f477f..23a0bf43b3 100644 --- a/quast_libs/options_parser.py +++ b/quast_libs/options_parser.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/plotter.py b/quast_libs/plotter.py index d88fc87f66..60dc591693 100644 --- a/quast_libs/plotter.py +++ b/quast_libs/plotter.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/plotter_data.py b/quast_libs/plotter_data.py index 40f36b37f1..27f9e93b5d 100644 --- a/quast_libs/plotter_data.py +++ b/quast_libs/plotter_data.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/qconfig.py b/quast_libs/qconfig.py index 4f1f525f6c..be6d6422f7 100644 --- a/quast_libs/qconfig.py +++ b/quast_libs/qconfig.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/qutils.py b/quast_libs/qutils.py index 90b73f0e92..13dc12a834 100644 --- a/quast_libs/qutils.py +++ b/quast_libs/qutils.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/ra_utils/misc.py b/quast_libs/ra_utils/misc.py index a1029bb8da..1f37d6d177 100644 --- a/quast_libs/ra_utils/misc.py +++ b/quast_libs/ra_utils/misc.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/reads_analyzer.py b/quast_libs/reads_analyzer.py index 9c27b28226..d9bc5b1e2d 100644 --- a/quast_libs/reads_analyzer.py +++ b/quast_libs/reads_analyzer.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/reporting.py b/quast_libs/reporting.py index 262b33755b..f28d39ea7f 100644 --- a/quast_libs/reporting.py +++ b/quast_libs/reporting.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/run_barrnap.py b/quast_libs/run_barrnap.py index 11b84a5bd8..589ffd1da8 100644 --- a/quast_libs/run_barrnap.py +++ b/quast_libs/run_barrnap.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/run_busco.py b/quast_libs/run_busco.py index c2479f084b..859e5f2482 100644 --- a/quast_libs/run_busco.py +++ b/quast_libs/run_busco.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/search_references_meta.py b/quast_libs/search_references_meta.py index f9a75103cd..b956b4f54f 100644 --- a/quast_libs/search_references_meta.py +++ b/quast_libs/search_references_meta.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/quast_libs/unique_kmers.py b/quast_libs/unique_kmers.py index 5e7fe978a3..813b7a227c 100644 --- a/quast_libs/unique_kmers.py +++ b/quast_libs/unique_kmers.py @@ -1,5 +1,5 @@ ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details. diff --git a/setup.py b/setup.py index 1f14ae0fad..66ea516219 100755 --- a/setup.py +++ b/setup.py @@ -1,7 +1,7 @@ #!/usr/bin/env python ############################################################################ -# Copyright (c) 2015-2019 Saint Petersburg State University +# Copyright (c) 2015-2020 Saint Petersburg State University # Copyright (c) 2011-2015 Saint Petersburg Academic University # All Rights Reserved # See file LICENSE for details.