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function.py
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function.py
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import os
import sys
import argparse
from datetime import datetime
from collections import OrderedDict
import numpy as np
import torch
import torch.nn as nn
import torch.optim as optim
from sklearn.metrics import roc_auc_score, accuracy_score,confusion_matrix
import torchvision
import torchvision.transforms as transforms
from skimage import io
from torch.utils.data import DataLoader
#from dataset import *
from torch.autograd import Variable
from PIL import Image
from tensorboardX import SummaryWriter
#from models.discriminatorlayer import discriminator
from conf import settings
import time
import cfg
from tqdm import tqdm
from utils import *
import torch.nn.functional as F
import torch
from einops import rearrange
import pytorch_ssim
from lucent.modelzoo.util import get_model_layers
from lucent.optvis import render, param, transform, objectives
from lucent.modelzoo import inceptionv1
args = cfg.parse_args()
GPUdevice = torch.device('cuda', args.gpu_device)
pos_weight = torch.ones([1]).cuda(device=GPUdevice)*2
criterion_G = torch.nn.BCEWithLogitsLoss(pos_weight=pos_weight)
loss_function_map = torch.nn.MSELoss()
seed = torch.randint(1,11,(args.b,7))
def train_baseline(args, net: nn.Module, optimizer, train_loader,
epoch, writer, schedulers=None):
total_number = len(train_loader.dataset)
groundtruths = []
predictions = []
loss_class = 0
loss_map = 0
for batch_index, (images, ave_seg, labels_seg, masks , labels_class, name) in enumerate(tqdm(train_loader, total=total_number, desc=f'Epoch {epoch}', unit='img')):
images = Variable(images)
labels_class = Variable(labels_class)
# mask = sum(masks) / 7 #b,2,w,h
labels_seg = ave_seg.to(dtype = torch.float32,device = GPUdevice)
labels_class = labels_class.to(dtype = torch.float32,device = GPUdevice)
images = images.to(device = GPUdevice)
# images = torch.cat((images, labels_seg), 1)
outputs_class = net(images)
optimizer.zero_grad()
outputs_class = outputs_class.squeeze()
# print('output class is:',nn.Sigmoid()(outputs_class).data.cpu().numpy())
loss_explicit = criterion_G(outputs_class, labels_class)
loss = loss_explicit
loss.backward()
optimizer.step()
n_iter = (epoch - 1) * len(train_loader) + batch_index + 1
groundtruths.extend(labels_class.data.cpu().numpy())
predictions.extend(nn.Sigmoid()(outputs_class).data.cpu().numpy())
loss_class += loss_explicit.item()
prediction = list(np.around(predictions))
auc = roc_auc_score(groundtruths, prediction)
cm = confusion_matrix(groundtruths, prediction)
sen = cm[1, 1] / (cm[1, 1] + cm[1, 0])
spec = cm[0, 0] / (cm[0, 0] + cm[0, 1])
acc = accuracy_score(groundtruths, prediction)
writer.add_scalar('Train/AUC', auc, epoch)
writer.add_scalar('Train/ACC', acc, epoch)
writer.add_scalar('Train/SEN', sen, epoch)
writer.add_scalar('Train/SPEC', spec, epoch)
writer.add_scalar('Train/loss_class', loss_class/total_number, epoch)
print('\t Train auc: %.4f' %auc)
print('\t Train acc: %.4f' % acc)
print('\t Confusion Matrix:\n %s\n' % str(cm))
return loss_class/total_number
def train_seg(args, net: nn.Module, optimizer, train_loader,
epoch, writer, schedulers=None, vis = 50):
hard = 0
epoch_loss = 0
criterion_G = nn.BCEWithLogitsLoss()
ind = 0
# train mode
net.train()
optimizer.zero_grad()
epoch_loss = 0
GPUdevice = torch.device('cuda:' + str(args.gpu_device))
device = GPUdevice
with tqdm(total=len(train_loader), desc=f'Epoch {epoch}', unit='img') as pbar:
for imgs, ave_seg, ones, masks , labels_class, name in train_loader:
mask_type = torch.float32
ind += 1
b_size,c,w,h = imgs.size()
if b_size == 1: ##batch norm cannot handel batch 1
continue
'''note ave_seg here is not equal to average of ones, ave_seg is hard'''
true_mask = masks.to(dtype = mask_type,device = GPUdevice)
# true_mask = torch.mean(torch.stack(masks), dim =0).to(dtype = mask_type,device = GPUdevice)
ave_seg = ave_seg.to(dtype = mask_type,device = GPUdevice)
# prior = torch.ones(b_size,2,w,h)*0.5
# prior = prior.to(dtype = mask_type,device = GPUdevice)
# true_mask_ave = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = GPUdevice)
# for n, rater_n_true in enumerate(masks):
# rater_n_true = rater_n_true.to(dtype=mask_type, device = GPUdevice)
# true_mask_ave += torch.mul(rater_n_true, 1 / 7)
# true_mask_ave = ave_seg.to(dtype=mask_type, device = GPUdevice)
# '''possibility attribution'''
# #attr_vec = torch.randn(b_size, 6) * 0.15 + 0.5 # a normal distribution with mean: 0.5, variance 0.15
# attr_vec = torch.randint(1,11,(b_size,6)).to(dtype=torch.float32)
# attr_map = torch.randint(1,11,(b_size,6,w,w)).to(dtype=torch.float32)
# attr_map_ave = torch.tensor([1]).expand(b_size, 6, w, w).to(dtype=mask_type)
attr_map = seed.unsqueeze(-1).unsqueeze(-1).expand(b_size, 7, w, w).to(dtype=torch.float32, device=GPUdevice)
attr_map = nn.Softmax(dim = 1)(attr_map)
# attr_map_ave = nn.Softmax(dim = 1)(attr_map_ave).to(dtype=torch.float32).to(device=device)
# '''preprocess the true_masks'''
# true_mask_ave = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = device)
# true_mask_p = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = device)
# true_mask_marg = []
# for n, rater_n_true in enumerate(masks):
# rater_n_true = rater_n_true.to(dtype=mask_type, device = device)
# true_mask_ave += torch.mul(rater_n_true, 1 / 7) # size [b,2,256,256]
# true_mask_p += torch.mul(rater_n_true,attr_map[:,n,:,:].unsqueeze(1))
# true_mask_marg.append(rater_n_true)
# '''end'''
'''init'''
if hard:
true_mask = (true_mask > 0.5).float()
#true_mask_ave = cons_tensor(true_mask_ave)
imgs = imgs.to(dtype = mask_type, device = GPUdevice)
'''Train'''
pred = net(imgs)
pred = F.sigmoid(pred)
loss = nn.BCELoss()(pred, true_mask)
pbar.set_postfix(**{'loss (batch)': loss.item()})
epoch_loss += loss.item()
loss.backward()
# nn.utils.clip_grad_value_(net.parameters(), 0.1)
optimizer.step()
optimizer.zero_grad()
'''vis images'''
if vis:
if ind % vis == 0:
namecat = ''
for na in name:
namecat = namecat + na + '+'
vis_image(imgs,pred,true_mask, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'), reverse=False)
pbar.update()
return loss
def train_rec(args, net: nn.Module, optimizer, train_loader,
epoch, writer, schedulers=None, vis = 50):
hard = 0
criterion_G = nn.BCEWithLogitsLoss()
ind = 0
# train mode
net.train()
optimizer.zero_grad()
GPUdevice = torch.device('cuda:' + str(args.gpu_device))
device = GPUdevice
with tqdm(total=len(train_loader), desc=f'Epoch {epoch}', unit='img') as pbar:
for imgs, ave_seg, ones, masks , labels_class, name in train_loader:
mask_type = torch.float32
ind += 1
b_size,c,w,h = ave_seg.size()
if b_size == 1: ##batch norm cannot handel batch 1
continue
'''note ave_seg here is not equal to average of ones, ave_seg is hard'''
true_mask = torch.mean(torch.stack(masks), dim =0).to(dtype = mask_type,device = GPUdevice)
ave_seg = ave_seg.to(dtype = mask_type,device = GPUdevice)
prior = torch.ones(b_size,2,w,h)*0.5
prior = prior.to(dtype = mask_type,device = GPUdevice)
# true_mask_ave = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = GPUdevice)
# for n, rater_n_true in enumerate(masks):
# rater_n_true = rater_n_true.to(dtype=mask_type, device = GPUdevice)
# true_mask_ave += torch.mul(rater_n_true, 1 / 7)
# true_mask_ave = ave_seg.to(dtype=mask_type, device = GPUdevice)
# '''possibility attribution'''
# #attr_vec = torch.randn(b_size, 6) * 0.15 + 0.5 # a normal distribution with mean: 0.5, variance 0.15
cond = torch.ones(b_size,7).to(dtype=torch.float32,device = GPUdevice) * (1/7)
cond = cond.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand(b_size,7,2,256,256)
cond = rearrange(cond,"b c a h w -> b (c a) h w")
# attr_map = torch.randint(1,11,(b_size,6,w,w)).to(dtype=torch.float32)
# attr_map_ave = torch.tensor([1]).expand(b_size, 6, w, w).to(dtype=mask_type)
attr_map = torch.randint(1,11,(b_size,7)).unsqueeze(-1).unsqueeze(-1).expand(b_size, 7, w, w).to(dtype=torch.float32, device=GPUdevice)
attr_map = nn.Softmax(dim = 1)(attr_map)
# attr_map_ave = nn.Softmax(dim = 1)(attr_map_ave).to(dtype=torch.float32).to(device=device)
'''preprocess the true_masks'''
true_mask_ave = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = device)
true_mask_marg = []
for n, rater_n_true in enumerate(masks):
rater_n_true = rater_n_true.to(dtype=mask_type, device = device)
true_mask_ave += torch.mul(rater_n_true, 1 / 7) # size [b,2,256,256]
true_mask_marg.append(rater_n_true)
'''end'''
'''init'''
if hard:
true_mask_ave = (true_mask_ave > 0.5).float()
#true_mask_ave = cons_tensor(true_mask_ave)
true_mask_p = true_mask_ave
imgs = imgs.to(dtype = mask_type,device = GPUdevice)
'''Train'''
for rect in range(3):
net.train()
mask_pred, aux = net(imgs,cond)
preds, mergfs = aux['maps'], aux['mergfs']
mpt = F.sigmoid(mask_pred)
pred_stack = torch.stack(preds) #7,b,c,w,w
pred_stack_t = F.sigmoid(pred_stack)
rater_stack = torch.stack(true_mask_marg)
self_pred = (pred_stack_t ) * torch.div(pred_stack_t, torch.sum(pred_stack_t, dim = 0, keepdim=True))
cond = rearrange(self_pred, "a b c h w -> b (a c) h w").contiguous().detach() #b,7c,w,w
true_mask = torch.sum((rater_stack * torch.div(pred_stack_t, torch.sum(pred_stack_t, dim = 0, keepdim=True))), dim = 0 )
# assert torch.sum(torch.div(pred_stack_t.data, torch.sum(pred_stack_t.data, dim = 0, keepdim=True))) == (b_size*2*w*h)
# loss = criterion_G(pred_stack, rater_stack) + criterion_G(mask_pred, torch.clamp(true_mask_p, min = 0, max = 1))
# true_mask_p = torch.sum((torch.stack(masks, dim = 1).to(dtype = mask_type,device = GPUdevice) * cond.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand(b_size,7,2,128,128)), dim = 1)
'''shuffle loss'''
indexes = torch.randperm(pred_stack_t.shape[0])
shuffle_pred = pred_stack_t[indexes]
shuffle_rater = rater_stack[indexes]
cond_pred = (shuffle_pred ) * torch.div(pred_stack_t, torch.sum(pred_stack_t, dim = 0, keepdim=True))
cond_pred = rearrange(cond_pred, "a b c h w -> b (a c) h w").contiguous()
cond_rater = (shuffle_rater ) * torch.div(pred_stack_t, torch.sum(pred_stack_t, dim = 0, keepdim=True))
cond_rater = rearrange(cond_rater, "a b c h w -> b (a c) h w").contiguous().detach()
# _, auxp = net(imgs, cond_pred, mod = 'shuffle')
# _, auxr = net(imgs, cond_rater, mod = 'shuffle')
# mp = auxp['mergfs']
# mr = auxr['mergfs']
shuffle_loss = nn.BCELoss()(cond_pred,cond_rater)
'''end'''
'''SSIM LOSS'''
ssim_loss = pytorch_ssim.SSIM(window_size = 11)
true_mask_p = torch.clamp(true_mask_p, min = 0, max = 1)
true_mask = torch.clamp(true_mask, min = 0, max = 1)
last_rec = ssim_loss(mask_pred[:,0,:,:].unsqueeze(1), true_mask_p[:,0,:,:].unsqueeze(1)) + ssim_loss(mask_pred[:,1,:,:].unsqueeze(1), true_mask_p[:,1,:,:].unsqueeze(1))
this_rec = ssim_loss(true_mask[:,0,:,:].unsqueeze(1), mask_pred.detach()[:,0,:,:].unsqueeze(1)) + ssim_loss(true_mask[:,1,:,:].unsqueeze(1), mask_pred.detach()[:,1,:,:].unsqueeze(1))
rec_loss = last_rec + this_rec
'''END'''
# loss = nn.BCELoss()(torch.clamp(final_pred, min = 0, max = 1), torch.clamp(true_mask, min = 0, max = 1)) + criterion_G(mask_pred, torch.clamp(true_mask, min = 0, max = 1)) + shuffle_loss
loss = rec_loss + args.shuffle_weights * shuffle_loss
pbar.set_postfix(**{'loss (batch)': loss.item()})
loss.backward()
# nn.utils.clip_grad_value_(net.parameters(), 0.1)
optimizer.step()
optimizer.zero_grad()
true_mask_p = true_mask.detach()
torch.cuda.empty_cache()
'''vis images'''
if vis:
if ind % vis == 0:
namecat = ''
for na in name:
namecat = namecat + na + '+_rec' + str(rect) + '+'
vis_image(imgs,mpt,true_mask, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'), reverse=True)
pbar.update()
return loss
def train_sim(args, trans_net: nn.Module, trans_optimizer, train_loader,
epoch, writer, schedulers=None, vis = 50):
total_number = len(train_loader.dataset)
hard = 0
epoch_loss = 0
criterion_G = nn.BCEWithLogitsLoss()
# train mode
trans_net.train()
trans_optimizer.zero_grad()
epoch_loss = 0
mask_type = torch.float32
with tqdm(total=len(train_loader), desc=f'Epoch {epoch}', unit='img') as pbar:
for ind, (images, labels_seg, ones, masks, labels_class, name) in enumerate(train_loader):
labels_class = labels_class.to(dtype = mask_type,device = GPUdevice)
labels_seg = labels_seg.to(dtype = mask_type, device = GPUdevice)
imgs = images.to(dtype = mask_type, device = GPUdevice)
tm_mul = torch.mean(torch.stack(masks), dim =0).to(dtype = mask_type,device = GPUdevice)
'''init'''
if hard:
tm_mul = (tm_mul > 0.5).float()
#true_mask_ave = cons_tensor(true_mask_ave)
'''Train'''
mask_pred, coarse= trans_net(imgs)
loss = criterion_G(mask_pred, tm_mul) + criterion_G(coarse, labels_seg)
pbar.set_postfix(**{'loss (batch)': loss.item()})
epoch_loss += loss.item()
trans_optimizer.zero_grad()
loss.backward()
nn.utils.clip_grad_value_(trans_net.parameters(), 0.1)
trans_optimizer.step()
'''vis images'''
if ind % 50 == 0:
namecat = ''
for na in name:
namecat = namecat + na + '+'
vis_image(imgs,mask_pred,tm_mul, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'))
pbar.update()
return epoch_loss / total_number
def valuation_training(args, net: nn.Module, valuation_loader,
epoch, writer = None, schedulers=None):
test_loss_seg = 0.0 # cost function error
test_loss_class = 0.0
total_number = len(valuation_loader.dataset)
groundtruths = []
predictions = []
for batch_index, (images, ave_seg, labels_seg, masks, labels_class, name) in enumerate(tqdm(valuation_loader, total=total_number, desc=f'Epoch {epoch}', unit='img')):
images = Variable(images)
mask = sum(masks) / 7 #b,2,w,h
labels_seg = ave_seg.to(dtype = torch.float32,device = GPUdevice)
labels_class = labels_class.to(dtype = torch.float32,device = GPUdevice)
images = images.to(device = GPUdevice)
# images = torch.cat((images, labels_seg), 1)
outputs_class = net(images)
outputs_class = outputs_class.squeeze()
loss_class = criterion_G(outputs_class, labels_class)
test_loss_class += loss_class.item()
print('loss is:',loss_class.item())
groundtruths.extend(labels_class.data.cpu().numpy())
predictions.extend(nn.Sigmoid()(outputs_class).data.cpu().numpy())
prediction = list(np.around(predictions))
auc = roc_auc_score(groundtruths, predictions)
cm = confusion_matrix(groundtruths, prediction)
sen = cm[1, 1] / (cm[1, 1] + cm[1, 0])
spec = cm[0, 0] / (cm[0, 0] + cm[0, 1])
acc = accuracy_score(groundtruths, prediction)
# with open("./mh.txt","w") as f:
# for j in range(len(groundtruths)):
# f.write(str(predictions[j]))
# f.write(':')
# f.write(str(groundtruths[j]))
# f.write('\n')
#add informations to tensorboard
# writer.add_scalar('valuation/Average class loss', test_loss_class / total_number, epoch)
# writer.add_scalar('valuation/AUC', auc, epoch)
# writer.add_scalar('valuation/ACC', acc, epoch)
# writer.add_scalar('valuation/SEN', sen, epoch)
# writer.add_scalar('valuation/SPEC', spec, epoch)
print('\t Test auc: %.4f' %auc)
print('\t Test acc: %.4f' % acc)
print('\t Test sen: %.4f' % sen)
print('\t Test spec: %.4f' % spec)
print('\t Confusion Matrix:\n %s\n' % str(cm))
return auc, acc, sen, spec
def eval_training(args, net: nn.Module, valuation_loader,
epoch, writer, schedulers=None):
test_loss_seg = 0.0 # cost function error
test_loss_class = 0.0
total_number = len(valuation_loader.dataset)
groundtruths = []
predictions = []
for batch_index, (images, labels_seg, labels_class, name) in enumerate(valuation_loader):
images = Variable(images)
labels_class = Variable(labels_class)
labels_seg = Variable(labels_seg)
labels_class = labels_class.to(dtype = torch.float32,device = GPUdevice)
labels_seg = labels_seg.to(device = GPUdevice)
images = images.to(device = GPUdevice)
outputs_class = net(images)
outputs_class = outputs_class.squeeze()
loss_class = loss_function_class(outputs_class, labels_class.squeeze())
test_loss_class += loss_class.item()
groundtruths.extend(labels_class.data.cpu().numpy())
predictions.extend(nn.Sigmoid()(outputs_class).data.cpu().numpy())
prediction = list(np.around(predictions))
auc = roc_auc_score(groundtruths, predictions)
cm = confusion_matrix(groundtruths, prediction)
sen = cm[1, 1] / (cm[1, 1] + cm[1, 0])
spec = cm[0, 0] / (cm[0, 0] + cm[0, 1])
acc = accuracy_score(groundtruths, prediction)
#add informations to tensorboard
writer.add_scalar('Test/Average class loss', test_loss_class / total_number, epoch)
writer.add_scalar('Test/AUC', auc, epoch)
writer.add_scalar('Test/ACC', acc, epoch)
writer.add_scalar('Test/SEN', sen, epoch)
writer.add_scalar('Test/SPEC', spec, epoch)
print('\t Test auc: %.4f' %auc)
print('\t Test acc: %.4f' % acc)
print('\t Confusion Matrix:\n %s\n' % str(cm))
logger.info(f'Total loss: {test_loss_class / total_number}, auc: {auc}, acc: {acc}, sen: {sen}, spec: {spec} || @ epoch {epoch}.')
return auc
def rec_validate(args, val_loader, epoch, net: nn.Module, clean_dir=True):
# eval mode
net.eval()
mask_type = torch.float32
n_val = len(val_loader) # the number of batch
ave_res, mix_res = (0,0,0,0), (0,0,0,0)
rater_res = [(0,0,0,0) for _ in range(6)]
tot = 0
hard = 0
threshold = (0.1, 0.3, 0.5, 0.7, 0.9)
GPUdevice = torch.device('cuda:' + str(args.gpu_device))
device = GPUdevice
criterion_G = nn.BCEWithLogitsLoss()
with tqdm(total=n_val, desc='Validation round', unit='batch', leave=False) as pbar:
for ind, (imgs, seg, ones, masks , labels_class, name) in enumerate(val_loader):
imgs = imgs.to(device=GPUdevice, dtype=torch.float32)
b_size = imgs.size(0)
if b_size == 1: ##batch norm cannot handel batch 1
continue
w = masks[0].size(2)
with torch.no_grad():
cond = torch.ones(b_size,7).to(dtype=torch.float32,device = GPUdevice) * (1/7)
cond = cond.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand(b_size,7,2,256,256)
cond = rearrange(cond,"b c a h w -> b (c a) h w")
true_mask = seg.to(dtype = mask_type,device = GPUdevice)
'''Flow'''
for rect in range(3):
mask_pred, aux= net(imgs,cond)
preds, mergfs = aux['maps'], aux['mergfs']
mpt = F.sigmoid(mask_pred)
pred_stack = torch.stack(preds) #7,b,c,w,w
pred_stack_t = F.sigmoid(pred_stack)
self_pred = (pred_stack_t ) * torch.div(pred_stack_t, torch.sum(pred_stack_t, dim = 0, keepdim=True))
cond = rearrange(self_pred, "a b c h w -> b (a c) h w").contiguous().detach() #b,7c,w,w
'''END'''
tot += nn.BCELoss()(mpt, true_mask)
'''vis images'''
if ind % 10 == 0:
namecat = ''
for na in name:
img_name = na.split('\\')[-1]
namecat = namecat + img_name + '+'
vis_image(imgs,mpt,true_mask, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'), reverse=True)
temp = eval_seg(mpt, true_mask, threshold)
mix_res = tuple([sum(a) for a in zip(mix_res, temp)])
pbar.update()
return tot/ n_val , tuple([a/n_val for a in mix_res])
def seg_validate(args, val_loader, epoch, net: nn.Module, clean_dir=True):
# eval mode
net.eval()
mask_type = torch.float32
n_val = len(val_loader) # the number of batch
ave_res, mix_res = (0,0,0,0), (0,0,0,0)
rater_res = [(0,0,0,0) for _ in range(6)]
tot = 0
hard = 0
threshold = (0.1, 0.3, 0.5, 0.7, 0.9)
GPUdevice = torch.device('cuda:' + str(args.gpu_device))
device = GPUdevice
criterion_G = nn.BCEWithLogitsLoss()
with tqdm(total=n_val, desc='Validation round', unit='batch', leave=False) as pbar:
for ind, (imgs, ave_seg, ones, masks , labels_class, name) in enumerate(val_loader):
imgs = imgs.to(device=GPUdevice, dtype=torch.float32)
b_size = imgs.size(0)
if b_size == 1: ##batch norm cannot handel batch 1
continue
w = masks[0].size(2)
with torch.no_grad():
# attr_map = seed.unsqueeze(-1).unsqueeze(-1).expand(b_size, 7, w, w).to(dtype=torch.float32, device=GPUdevice)
# attr_map = nn.Softmax(dim = 1)(attr_map)
# true_mask_p = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = GPUdevice)
# true_mask_ave = torch.mean(torch.stack(masks), dim =0).to(dtype = mask_type,device = GPUdevice)
# for n, rater_n_true in enumerate(masks):
# rater_n_true = rater_n_true.to(dtype=mask_type, device = device)
# true_mask_p += torch.mul(rater_n_true,attr_map[:,n,:,:].unsqueeze(1))
true_mask_ave = masks.to(dtype = mask_type,device = GPUdevice)
'''Train'''
net = net.to(device=GPUdevice)
pred = net(imgs)
pred = F.sigmoid(pred)
tot += nn.BCELoss()(pred, true_mask_ave)
'''vis images'''
if ind % 1 == 0:
namecat = ''
for na in name:
img_name = na.split('\\')[-1]
namecat = namecat + img_name + '+'
vis_image(imgs,pred,true_mask_ave, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'), reverse=False)
temp = eval_seg(pred, true_mask_ave, threshold)
mix_res = tuple([sum(a) for a in zip(mix_res, temp)])
pbar.update()
return tot/ n_val , tuple([a/n_val for a in mix_res])
def sim_validate(args, val_loader, epoch, trans_net: nn.Module, sim_net: nn.Module, clean_dir=True):
# eval mode
trans_net.eval()
sim_net.eval()
mask_type = torch.float32
n_val = len(val_loader) # the number of batch
ave_res, mix_res = (0,0,0,0), (0,0,0,0)
rater_res = [(0,0,0,0) for _ in range(6)]
ind = 0
tot = 0
hard = 0
threshold = (0.1, 0.3, 0.5, 0.7, 0.9)
device = torch.device('cuda:' + str(args.gpu_device))
sim_device = torch.device('cuda:' + str(args.sim_gpu))
# baseline_model = get_network(args, args.baseline, use_gpu=args.gpu, gpu_device=sim_device, distribution = args.distributed)
# '''load pretrained baseline'''
# if args.base_weights != 0:
# assert os.path.exists(args.base_weights)
# checkpoint_file = os.path.join(args.base_weights)
# assert os.path.exists(checkpoint_file)
# loc = 'cuda:{}'.format(args.sim_gpu)
# checkpoint = torch.load(checkpoint_file, map_location=loc)
# baseline_model.load_state_dict(checkpoint['state_dict'],strict=False)
# baseline_model.eval()
with tqdm(total=n_val, desc='Validation round', unit='batch', leave=False) as pbar:
for imgs, true_masks, prior, name in val_loader:
ind += 1
imgs = imgs.to(device=device, dtype=torch.float32)
b_size = imgs.size(0)
if b_size == 1: ##batch norm cannot handel batch 1
continue
w = true_masks[0].size(2)
with torch.no_grad():
'''possibility attribution'''
#attr_vec = torch.randn(b_size, 6) * 0.15 + 0.5 # a normal distribution with mean: 0.5, variance 0.15
attr_vec = torch.randint(1,11,(b_size,6)).to(dtype=torch.float32)
# attr_map = torch.randint(1,11,(b_size,6,w,w)).to(dtype=torch.float32)
attr_map_ave = torch.tensor([1]).expand(b_size, 6, w, w).to(dtype=mask_type)
attr_map_ave = nn.Softmax(dim = 1)(attr_map_ave).to(device=device)
attr_map = torch.randint(1,11,(b_size,6)).unsqueeze(-1).unsqueeze(-1).expand(b_size, 6, w, w).to(dtype=torch.float32, device=device)
attr_map = nn.Softmax(dim = 1)(attr_map)
'''preprocess the true_masks'''
true_mask_ave = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = device)
true_mask_p = torch.tensor([0]).expand(b_size, 2, w, w).to(dtype=mask_type, device = device)
true_mask_marg = []
for n, rater_n_true in enumerate(true_masks):
rater_n_true = rater_n_true.to(dtype=mask_type, device = device)
#print("cupAAA{}".format(rater_n_true.sum().numpy() / (b_size * 2 * 256 * 256)))
true_mask_ave += torch.mul(rater_n_true, 1 / 6) # size [b,2,256,256]
true_mask_p += torch.mul(rater_n_true,attr_map[:,n,:,:].unsqueeze(1))
true_mask_marg.append(rater_n_true)
'''initialization'''
if hard:
true_mask_ave = (true_mask_ave > 0.5).float()
#true_mask_ave = cons_tensor(true_mask_ave)
attr_vec = attr_vec.to(device=device)
true_mask_ave = true_mask_ave.to(device=device)
true_mask_p = true_mask_p.to(device = device)
'''end'''
# ''' get prior'''
# prior = baseline_model(imgs.to(device = sim_device), attr_map.to(device = sim_device))
# prior = prior.to(device=sim_device,dtype=mask_type)
'''~~~ sim net head ~~~'''
condition = torch.mean(attr_map, dim = (2,3))
# rater_preds = sim_net(imgs.to(device = sim_device), prior, condition.to(device = sim_device))
rater_preds = sim_net(imgs.to(device = sim_device))
gold_sim = torch.tensor([0]).expand(b_size,2,w,w).to(dtype = mask_type, device = device)
for n, pred_n in enumerate(rater_preds):
gold_sim += torch.mul(pred_n.to(device = device),attr_map[:,n,:,:].unsqueeze(1).to(device = device))
'''~~~ end ~~~~'''
'''Trans'''
mask_pred = trans_net(imgs, attr_map, gold_sim.detach().to(dtype=torch.float32, device=device))
tot += F.binary_cross_entropy_with_logits(mask_pred, true_mask_p).item()
pred = F.sigmoid(mask_pred)
'''vis images'''
if ind % 10 == 0:
namecat = ''
for na in name:
img_name = na.split('\\')[-1]
namecat = namecat + img_name + '+'
vis_image(imgs,mask_pred,true_mask_p, os.path.join(args.path_helper['sample_path'], namecat+'epoch+' +str(epoch) + '.jpg'))
# '''save prior'''
# if ind % 1 == 0:
# for bid, na in enumerate(name): #iterate batch
# pt_name = na.split('\\')[-1].split('.')[0] + '.pt'
# img_path = os.path.join(args.data_path, na)
# save_path = os.path.join(img_path.rsplit('\\',1)[0], pt_name)
# torch.save(mask_pred[bid,:,:,:].cpu(), save_path.replace('\\', '/'))
temp = eval_seg(pred, true_mask_ave, threshold)
mix_res = tuple([sum(a) for a in zip(mix_res, temp)])
for rater, rater_pred in enumerate(rater_preds):
rater_pred = F.sigmoid(rater_pred)
true_mask = true_mask_marg[rater]
temp = eval_seg(rater_pred, true_mask, threshold)
rater_res[rater] = tuple([sum(a) for a in zip(rater_res[rater], temp)])
'''eval performance of ave'''
mask_pred, rater_preds = net(imgs, attr_map_ave, prior)
pred = F.sigmoid(mask_pred)
temp = eval_seg(pred, true_mask_ave, threshold)
ave_res = tuple([sum(a) for a in zip(ave_res, temp)])
pbar.update()
return tot/ n_val , tuple([a/n_val for a in mix_res]), tuple([a/n_val for a in ave_res]), [tuple([a/n_val for a in rater_tuple]) for rater_tuple in rater_res]
def First_Order_Adversary(args,net:nn.Module,oracle_loader):
total_number = len(oracle_loader.dataset)
net = net.to(device = GPUdevice).eval()
# print(get_model_layers(net))
groundtruths = []
predictions = []
ind = 0
for imgs, ave_mask, ones, masks, labels, name in tqdm(oracle_loader, total=total_number, unit='img'):
# print('label is:',int(labels[0]))
# if int(labels[0]) == 0:
# continue
obj = objectives.channel('labels', 0)
true_masks = torch.cat(ones,1).to(dtype = torch.float32,device = GPUdevice) #b,7,w,h
print("true masks size is",true_masks.size)
# true_masks = allone.to(dtype = torch.float32,device = GPUdevice)
imgs = imgs.to(dtype = torch.float32,device = GPUdevice)
'''init loss '''
# outputs_class = net(torch.cat((imgs, torch.mean(true_masks,1,keepdim = True)), 1))
# outputs_class = net(torch.cat((imgs, ave_mask.to(dtype = torch.float32,device = GPUdevice)), 1))
outputs_class = net(imgs)
outputs_class = outputs_class.squeeze()
labels = labels.to(dtype = torch.float32,device = GPUdevice)
loss_class = loss_function_class(outputs_class, labels)
print('inital loss is:',loss_class.item())
'''end'''
'''para and ad'''
param_f = lambda: para_image(256,256, imgs, fft=False, batch = args.b)
all_transforms = [
transform.pad(32),
transform.jitter(16),
transform.random_scale([n/100. for n in range(80, 120)]),
transform.random_rotate(list(range(-10,10)) + list(range(-5,5)) + 10*list(range(-2,2))),
transform.jitter(4),
]
cppn_param_f = lambda: cppn(256,img = imgs, seg = true_masks, batch=args.b, device = GPUdevice)
opt = lambda params: torch.optim.Adam(params, 5e-3)
imgs = render_vis(args, net, obj, param_f=cppn_param_f, optimizer = opt, transforms=[], show_inline=True, image_name=name,save_image=True, label = int(labels[0]))
'''end'''
'''last loss'''
outputs_class = net(imgs)
outputs_class = outputs_class.squeeze()
loss_class = loss_function_class(outputs_class, labels)
print('after loss is',loss_class.item())
'''end'''
groundtruths.extend(labels.data.cpu().numpy())
predictions.extend(nn.Sigmoid()(outputs_class).data.cpu().numpy())
prediction = list(np.around(predictions))
auc = roc_auc_score(groundtruths, predictions)
cm = confusion_matrix(groundtruths, prediction)
sen = cm[1, 1] / (cm[1, 1] + cm[1, 0])
spec = cm[0, 0] / (cm[0, 0] + cm[0, 1])
acc = accuracy_score(groundtruths, prediction)
print('\t Test auc: %.4f' %auc)
print('\t Test acc: %.4f' % acc)
print('\t Confusion Matrix:\n %s\n' % str(cm))
return auc