Update Cylc to handle new FSD

[tdivoll]

• make a new Cylc template for FSD routine: feat: support loading and preprocessing data using cylc ebseg#43
• auto populate the Jinja template with the flag needed to trigger FSD in the CLI preprocessing wrapper

[hollandjg]

Added support for cylc and FSD with WilhelmusLab/ebseg#43

[hollandjg]

This needs a lot of changes to the IceFloeTracker.jl, ebseg and ice-floe-tracker-pipeline repos:

IceFloeTracker.jl

Prototype branch: https://github.com/WilhelmusLab/IceFloeTracker.jl/tree/jghrefactor/support-labeled-segmented-images

• Add support for labeled segmented floe images in
  • _pairfloes
  • addfloemasks!
  • bwtraceboundary
  • cropfloe
• Add support for floating point centroids in convertcentroid! (either by
  • updating lookup code to round the numbers as in the prototype, or
  • doing a proper affine transformation.)
• Fix a broken call to sort! in find_reflectance_peaks
• Fix conda environment creation

ebseg

Prototype branch: https://github.com/WilhelmusLab/ebseg/tree/update-regionprops-names

• chore: remove extra pytest configuration for vscode
• feature: add better parsing of bounding boxes (allow different formats)
• feature: add support for falsecolor band 721 Add support for false-color images (band721) ebseg#59
• refactor: get_region_properties rename props in output file to match IceFloeTracker.jl
• feature: get_region_properties add bounding box and convex area

ice-floe-tracker-pipeline

Prototype branch: https://github.com/WilhelmusLab/ice-floe-tracker-pipeline/tree/jghrefactor/6-makeh5files-support

• refactor: merge Julia files into a single directory IFTPipeline.jl with src/ and test/ and the Project.toml and Manifest.toml files.
• Set up CLI wrapper to write to STDOUT and STDERR as default (use 2>&1 file syntax to redirect to file if needed)
• Set up CLI wrapper to handle a --debug flag to write more output to terminal
• Add a version of the following tasks to work on single generic files (TIFF, CSV), including CLI and tests:
  • landmask generation
  • preprocessing
  • extract features
  • export to H5 files
• Add a version of the following tasks to work on explicit collections of generic files (TIFF, CSV) including CLI and tests:
  • track floes
• refactor: make new version of the cylc workflow which uses the single file inputs and outputs
• feature: add docker support to new cylc workflow file, but don't lose the ability to run locally
• chore: clean up cylc files – there should be one canonical cylc file which has all the options
  • Is there a way we could analyze the data every time Aqua and Terra pass over the area? Rather than every day, do every overpass?
• make a docker container which has an entry point for the IFT CLI application.
• update pass_time.py to remove duplication of aqua/terra code, use an ISO 8601 date format (rather than MM-DD-YYYY)