CI: Install and test with Python and fslavwutils #6

	name: Test suite

	on:
	push:
	branches:
	- master
	tags:
	- "*"
	pull_request:
	branches:
	- master

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -el {0}

	# Commented sections to be uncommented once CI is active
	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.6", "3.7", "3.8", "3.9", "3.10", "3.11"]
	requires: ["requirements.txt"]
	# Can't use 2.7 with fsl from conda
	# python-version: ["2.7", "3.6", "3.7", "3.8", "3.9", "3.10", "3.11"]
	# Can't drop requirements.txt without build isolation
	# requires: ["", "requirements.txt"]

	steps:
	- name: Checkout repo
	uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: ${{ matrix.python-version }}
	mamba-version: "*"
	channels: https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/,conda-forge
	environment-file: .github/test-env.yml
	- name: Check environment
	run: \|
	which python
	which python3
	echo $CONDA_PREFIX
	echo $PATH
	- name: Update pip and pytest
	run: python -m pip install --upgrade pip pytest pytest-cov
	- name: Install requires
	run: \|
	python -m pip install -r ${{ matrix.requires }}
	if: ${{ matrix.requires }}
	- name: Install gradunwarp
	run: \|
	python -m pip install .
	- name: Test
	run: pytest --cov gradunwarp

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