wb_command’ is not an internal or external command, nor is it a runnable programme

[SuperLuckyKris]

coord_file = cifti_read(‘E:\Desktop\GII\two\two\sub-070_space-fsLR_den-91k_curv.dscalar.nii’);
‘wb_command’ is not an internal or external command, nor is it a runnable programme
or batch file.
Error using my_system
command failed: ‘wb_command -file-convert -cifti-version-convert E:\Desktop\GII\two\two\sub-070_space-fsLR_den-91k_curv.dscalar.nii 2
C:\Users\ASUS\AppData\Local\Temp\tp8e1c5aea_186c_45cb_a5d3_d3b0bd362e30.sub-070_space-fsLR_den-91k_curv.dscalar.nii’

Error cifti_read (line 41)
my_system([options.wbcmd ‘ -file-convert -cifti-version-convert “ filename ” 2 ’ tmpfile]).

Translated with DeepL.com (free version)

[SuperLuckyKris]

Simply configure wb_command, then run
wb_command -file-convert -cifti-version-convert E:\Desktop\GII\two\two\sub-070_space-fsLR_den-91k_curv.dscalar.nii 2 E:\Desktop\GII\two\two\sub-070.dscalar.nii \two\sub-070.dscalar.nii
Then a new sub-070.dscalar.nii will be generated
It will be straightforward to use coord_file = ciftiopen(‘sub-070.dscalar.nii’);

[coalsont]

If wb_command is on your shell's PATH (or you specify the full path to it with cifti_read(..., 'wbcmd', '<PATH>/wb_command'), cifti_read will automatically do the conversion for you, so you don't have to do it manually.

How did you end up with a cifti-1 file? We switched to cifti-2 before the major HCP YA releases. There also should have been a warning printed by cifti_read that the file wasn't version 2 and that it would attempt to convert it, which is not in the output you pasted...

[SuperLuckyKris]

If wb_command is on your shell's PATH (or you specify the full path to it with cifti_read(..., 'wbcmd', '<PATH>/wb_command'), cifti_read will automatically do the conversion for you, so you don't have to do it manually.

How did you end up with a cifti-1 file? We switched to cifti-2 before the major HCP YA releases. There also should have been a warning printed by cifti_read that the file wasn't version 2 and that it would attempt to convert it, which is not in the output you pasted...

Here's the full message of the error

I have configured the wb_command environment

[coalsont]

Open a new matlab instance and it should pick up the new PATH that has wb_command, and it should be able to load the file directly.

How did you get a cifti-1 file? Virtually everything publicly available should be cifti-2, including the default output of tools.

Not sure why this warning didn't show up in your output, did you modify the code?

cifti-matlab/cifti_read.m

Line 37 in 5e2da20

warning(['cifti file "' filename '" appears to not be version 2, converting using wb_command...']);

[SuperLuckyKris]

Open a new matlab instance and it should pick up the new PATH that has wb_command, and it should be able to load the file directly.

How did you get a cifti-1 file? Virtually everything publicly available should be cifti-2, including the default output of tools.

Not sure why this warning didn't show up in your output, did you modify the code?

cifti-matlab/cifti_read.m

Line 37 in 5e2da20

warning(['cifti file "' filename '" appears to not be version 2, converting using wb_command...']);

This file was given to me by my mentor, the source code I tried to modify this place to system([options.wbcmd ‘ -file-convert -cifti-version-convert “ filename ” 2 ’ tmpfile]); I found that it still reported an error, so I ran the cmd command manually