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DESCRIPTION
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Package: MSstatsConvert
Title: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Version: 1.17.1
Authors@R: c(
person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut","cre")),
person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = "aut"),
person("Anthony", "Wu", email = "wu.anthon@northeastern.edu", role = "aut"),
person("Meena", "Choi", email = "mnchoi67@gmail.com", role = "aut"),
person("Ting", "Huang", email = "thuang0703@gmail.com", role = "aut"),
person("Olga", "Vitek", , email = "o.vitek@northeastern.edu", role = "aut"))
Description: MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools
into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: MassSpectrometry, Proteomics, Software, DataImport, QualityControl
Depends:
R (>= 4.0)
Imports:
data.table,
log4r,
methods,
checkmate,
utils,
stringi
Suggests:
tinytest,
covr,
knitr,
rmarkdown
Collate:
'clean_ProteinProspector.R'
'clean_Metamorpheus.R'
'clean_DIANN.R'
'clean_Philosopher.R'
'clean_Spectronaut.R'
'clean_SpectroMine.R'
'clean_Skyline.R'
'clean_ProteomeDiscoverer.R'
'clean_Progenesis.R'
'clean_OpenSWATH.R'
'clean_OpenMS.R'
'clean_MaxQuant.R'
'clean_DIAUmpire.R'
'MSstatsConvert_core_functions.R'
'converters_DIANNtoMSstatsFormat.R'
'converters_DIAUmpiretoMSstatsFormat.R'
'converters_FragPipetoMSstatsFormat.R'
'converters_MaxQtoMSstatsFormat.R'
'converters_MetamorpheusToMSstatsFormat.R'
'converters_OpenMStoMSstatsFormat.R'
'converters_OpenSWATHtoMSstatsFormat.R'
'converters_PDtoMSstatsFormat.R'
'converters_ProgenesistoMSstatsFormat.R'
'converters_ProteinProspectortoMSstatsTMTFormat.R'
'converters_SkylinetoMSstatsFormat.R'
'converters_SpectronauttoMSstatsFormat.R'
'utils_MSstatsConvert.R'
'utils_annotation.R'
'utils_balanced_design.R'
'utils_checks.R'
'utils_classes.R'
'utils_clean_features.R'
'utils_documentation.R'
'utils_dt_operations.R'
'utils_filtering.R'
'utils_fractions.R'
'utils_logging.R'
'utils_shared_peptides.R'
VignetteBuilder: knitr