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Add queries for displaying bulk sequencing data (similar to scRNAseq queries)
Might also need bulk_seq (or similar) node label to determine which pages to add to?
On DataSet page
'List all Samples for ___' query (might want to say expression patterns rather than samples?)
match (s:Sample)-[:has_source]->(ds:DataSet)
where ds.iri = 'http://www.ncbi.nlm.nih.gov/bioproject/PRJNA480794'
optional match (s)-[:INSTANCEOF]->(e:Expression_pattern)
optional match (ds)-[:has_reference]->(p:pub)
return s.label AS Name, e.label AS `Expression Pattern`, p.miniref[0] AS Reference
Would be nice to also get anatomy by linking up to exp curation
On Sample page
'Genes expressed in ___' query
match (s:Sample)-[r:expresses]->(g:Gene)
where s.iri = 'http://www.ncbi.nlm.nih.gov/biosample/SAMN09650153'
match (s)-[:INSTANCEOF]->(ep:Expression_pattern)
return g.label AS Gene, ep.label AS `Expression Pattern`, r.expression_level[0] AS Level
NB - no extent for bulk seq data
Query for anatomy that the driver is expressed in (same as on parent expression pattern class)
On Expression pattern page (and maybe also Anatomy pages?)
Bulk RNA sequencing data for ___' query
match (ep:Expression_pattern)<-[:INSTANCEOF]-(s:Sample)
where ep.iri = 'http://virtualflybrain.org/reports/VFBexp_FBtp0093500FBtp0093501'
match (s)-[:has_source]->(ds:DataSet)
optional match (ds)-[:has_reference]->(p:pub)
return s.label AS Sample, ep.label AS `Expression pattern`, ds.label AS Dataset, p.miniref[0] AS Reference
Not sure how to link from Anatomy
The text was updated successfully, but these errors were encountered:
Add queries for displaying bulk sequencing data (similar to scRNAseq queries)
Might also need bulk_seq (or similar) node label to determine which pages to add to?
On DataSet page
Would be nice to also get anatomy by linking up to exp curation
On Sample page
NB - no extent for bulk seq data
On Expression pattern page (and maybe also Anatomy pages?)
Not sure how to link from Anatomy
The text was updated successfully, but these errors were encountered: