requirements-dev.txt

# Runtime requirements
--requirement requirements.txt

# Testing
pytest==2.5.1
py==1.4.19
mock==1.0.1
unittest2

# Linting
flake8==2.1.0
mccabe==0.2.1
pep8==1.4.6
pyflakes==0.7.3

# Documentation
Sphinx
sphinx_rtd_theme
docutils==0.11
Jinja2==2.7.1
MarkupSafe==0.18
Pygments==1.6

# Miscellaneous
Paver==1.2.1
colorama==0.2.7
numpy
pyparsing
tornado
python-dateutil
setuptools
pytz
six>=1.3
biopython
ruffus
cutadapt>=1.8.3
pyyaml
bunch==1.0.1
path.py==5.2
termcolor
matplotlib
tempdir
sh

# bio_pieces
argparse
future
pandas
docopt
schema
git+https://github.com/VDBWRAIR/bio_pieces.git@v1.1.0#egg=bio_pieces