nextflow.config

manifest {
  // Read more at https://www.nextflow.io/docs/latest/config.html#config-manifest
  author = 'Unseen Bio ApS'
  description = 'A demo workflow showing download, extraction, and compression of sequences from SRA.'
  homePage = 'https://unseenbio.com'
  name = 'SRA Demo'
  nextflowVersion = '!20.07+'
  version = '0.1.0'
}

params {
  tracedir = 'info'
  scratch_space = '/scratch'
}

process {
  withLabel: 'fasterq_dump' {
    // Six threads is the default value for fasterq-dump.
    cpus = 8
  }
}

profiles {
  docker {
    // Read more at https://www.nextflow.io/docs/latest/docker.html
    process.container = 'quay.io/biocontainers/mulled-v2-2b04072095278721dc9a5772e61e406f399b6030:0bee93cf06c1df6756108692721dd0a0e2d5341f-0'
    docker {
      enabled = true
      temp = params.scratch_space
      fixOwnership = true
    }
  }
}

timeline {
  enabled = true
  file = "${params.tracedir}/execution_timeline.html"
}